FC876483

Overview
NameFC876483
Unique NameFC876483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15135 contig Ccv1_Contig15135:102..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.785e-26
Identity = 59/163 (36.20%), Postives = 100/163 (61.35%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKTE 559
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R    +FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ N + V  RGE++ELL+DKTE
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTE 162          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.017e-25
Identity = 62/165 (37.58%), Postives = 98/165 (59.39%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKTE 559
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ N + V  RGEK+ELL+DKTE
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTE 162          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.328e-25
Identity = 58/163 (35.58%), Postives = 99/163 (60.74%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKTE 559
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ N + V  RGE++ELL+DKTE
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTE 162          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.328e-25
Identity = 62/163 (38.04%), Postives = 105/163 (64.42%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKF-TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKT 556
            S++Y+ VARGTV+LAE +  + N ++IA Q L+K+P   +   +Y+ D + F+    +G T   +A E AGR+IP +FLE + + F + YG     +A A ++N EF   L + ++Y  + P     ++++K ++++V+ VM+EN + +LDRGE++ELLVDKT
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKT 162          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 58/163 (35.58%), Postives = 99/163 (60.74%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKTE 559
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ N + V  RGE++ELL+DKTE
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTE 162          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 58/163 (35.58%), Postives = 99/163 (60.74%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKTE 559
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ N + V  RGE++ELL+DKTE
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTE 162          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.046e-25
Identity = 60/163 (36.81%), Postives = 98/163 (60.12%), Query Frame = 2
Query:   74 LIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMEN-NEKVLDRGEKIELLVDKTE 559
            +IYS VARG+ +LAE+T   GNF +I  + L  +P  + K +Y  + + F+YLV +  TY  +A E  GR+IP  FL+ VK  F   Y G K  TA+A  +N +F   L+  M +   +   +  +++  A++ EVK +++ +   ++L RGEKIE+LV++T+
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTD 163          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25
Identity = 58/163 (35.58%), Postives = 98/163 (60.12%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKTE 559
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY    + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ N + V  RGE++ELL+DKTE
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTE 162          
BLAST of FC876483 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.384e-20
Identity = 58/167 (34.73%), Postives = 92/167 (55.09%), Query Frame = 2
Query:   59 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENNEKVLDRGEKIELLVDKTE 559
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P T+ K  Y  + H F+Y+ EN   +  +  E  G QIP  FL  +++ F + YG   +  +   + +  F   L+E M+Y   +P+  +K+  V  QVSE KG + +  EK + RGEKIE++VDKTE
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTE 163          
The following BLAST results are available for this feature:
BLAST of FC876483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAMP7_MOUSE7.785e-2636.20Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK1.017e-2537.58Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT1.328e-2535.58Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VA712_ARATH1.328e-2538.04Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_HUMAN3.864e-2535.58Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN3.864e-2535.58Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAM7B_DICDI5.046e-2536.81Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_PONAB8.608e-2535.58Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI6.384e-2034.73Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CC09RM1 EHR Citrus clementina cDNA clone KN0AAN2CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876483 ID=FC876483; Name=FC876483; organism=Citrus clementina; type=EST; length=561bp
CAAATCTAGCATTTCTTTAGTTTCCCTCTCTCCGATCCCACGGGTTAGGG
TTTTGAGGATGGGCCAACAGTCGTTGATCTATAGCTTCGTGGCTCGAGGC
ACGGTGATCCTCGCCGAGTACACTGAGTTCACCGGTAATTTCACGAGCAT
CGCATCGCAATGTCTCCAGAAACTTCCCGCTACCAATAACAAGTTCACCT
ACAACTGCGATGGCCACACCTTCAATTACCTCGTTGAGAACGGCTTCACC
TATTGTGTGGTTGCTGTTGAATCTGCTGGCAGGCAAATTCCAATTGCCTT
TCTGGAGCGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGAGGAAAAG
CTGCAACGGCTGTTGCAAATAGCCTGAACAAGGAGTTTGGGTCTAAACTA
AAGGAGCACATGCAGTATTGTGTGGATCATCCTGAAGAGATCAGCAAGCT
TGCCAAAGTCAAAGCTCAGGTCTCTGAAGTCAAGGGGGTTATGATGGAAA
ATAATGAGAAGGTTCTTGATCGTGGTGAGAAGATTGAGCTGCTGGTTGAC
AAAACTGAGAA
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