FC876490

Overview
NameFC876490
Unique NameFC876490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:73..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: L18A_LUPLU (Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 60/160 (37.50%), Postives = 97/160 (60.62%), Query Frame = -3
Query:  157 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLE-KEKGIFKALEAYALANPN 633
            MG+     E +ST+ P KL+K      D ++PKV+ + +++VE++ G+GGPG+IKK   +      +  H +DA+D+ N  YNY  I GEG     +++ +SYESK++  PDGGS   + +KF+ K   ++  E V+   + K  G+FKA+E Y LA+P+
Sbjct:    1 MGIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE--SLEKISYESKILPGPDGGSIGKINVKFHTK--GDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 155          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: L18B_LUPLU (Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = -3
Query:  157 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 633
            MGV     E  S +   KLFK      D ++PKV+ Q+ ++VE++ G+GGPG++KK     G    Y  H +DA+D+ +  YNY  + G G     +++ +++ESK++  PDGGS   + +KF+ K G  + +   +    +  G+FKA+E Y LANPN
Sbjct:    1 MGVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQI-QSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDE--SLEKITFESKLLSGPDGGSIGKIKVKFHTK-GDVLSDAVREEAKARGTGLFKAVEGYVLANPN 155          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: RNS1_PANGI (Ribonuclease 1 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 64/158 (40.51%), Postives = 88/158 (55.70%), Query Frame = -3
Query:  163 GVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGS--KSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 630
            GV    VE TST+P +KL+   +L  D +LPK  PQ +K+ E+I GDGG G++K     E + +   K  +DA+DK+   Y Y  I   GD  +  I+ +     +V TPDGGS  K+T +  +     A I EE +K   EK   IFKA+EAY LAN
Sbjct:    1 GVQKTEVEATSTVPAQKLYAGLLLDIDDILPKAFPQAIKSSEIIEGDGGVGTVKLVTLGEASQFNTMKQRIDAIDKDALTYTYSII--GGDILLDIIESIVNHFTIVPTPDGGSIVKNTTI--YNTIGDAVIPEENIKDATEKAGLIFKAVEAYLLAN 154          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PR13_PETCR (Pathogenesis-related protein B OS=Petroselinum crispum GN=PCPR1-3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 62/157 (39.49%), Postives = 87/157 (55.41%), Query Frame = -3
Query:  163 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 633
            MGV    VE TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG G++K  +  + + +K  K  VDA+DK    Y+Y  I  +GD  +  I+ ++     V   DGG      I F  K  A + EE +K   ++   IFKA+EAY +AN
Sbjct:    1 MGVQKSEVEATSSVSAEKLFKGLCLDIDTLLPRVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PR11_PETCR (Pathogenesis-related protein A OS=Petroselinum crispum GN=PCPR1-1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 62/157 (39.49%), Postives = 87/157 (55.41%), Query Frame = -3
Query:  163 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 633
            MGV    VE TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG G++K  +  + + +K  K  VDA+DK    Y+Y  I  +GD  +  I+ ++     V   DGG      I F  K  A + EE +K   ++   IFKA+EAY +AN
Sbjct:    1 MGVQKSEVETTSSVSAEKLFKGLCLDIDTLLPQVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PRS2_SOLTU (Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = -3
Query:  157 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 633
            MGV +   E T+ + P +LFK  V+  D L+PK++PQV KN+E      G GSIKK NFVEG+  KY KH +  +D +N +  Y  IEG+  GD     ++ +SY+ K     +GG     + +++ K    +K+E+   G ++   +FK +EAY LANP+
Sbjct:    1 MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQV-KNIEA----EGDGSIKKMNFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGGCVCKSITEYHTKGDYVLKDEEHNEGQKQGMELFKIVEAYLLANPS 152          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: ALL2_APIGR (Major allergen Api g 2 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 64/159 (40.25%), Postives = 92/159 (57.86%), Query Frame = -3
Query:  163 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGS--KSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 633
            MGV    VE  ST+  EK+++ F+L  DT+ PKVLPQ++K+VE++ GDGG G++K  +  E  ++   K  VD +DK    Y Y  I   GD  +  ++ V  E  VV T DGG   K+T +  +  K  A + E+++K   EK    FKA+EAY LAN
Sbjct:    1 MGVQKTVVEAPSTVSAEKMYQGFLLDMDTVFPKVLPQLIKSVEILEGDGGVGTVKLVHLGEATEYTTMKQKVDVIDKAGLAYTYTTI--GGDILVDVLESVVNEFVVVPT-DGGCIVKNTTI--YNTKGDAVLPEDKIKEATEKSALAFKAVEAYLLAN 154          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: PRS1_SOLTU (Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.829e-21
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = -3
Query:  157 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 633
            MGV +  +E T+ + P +LFK  V+  D L+PK++PQV KN+E      G GSIKK  FVEG+  KY KH +  +D +N +  Y  IEG+  GD     ++ +SY+ K     +GG     + +++ K    +K+E    G ++   +FK +EAY LANP+
Sbjct:    1 MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQV-KNIEA----EGDGSIKKMTFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGGCVCKSIAEYHTKGDYVLKDEDHNEGKKQGMELFKIVEAYLLANPS 152          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: ABR17_PEA (ABA-responsive protein ABR17 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 56/158 (35.44%), Postives = 89/158 (56.33%), Query Frame = -3
Query:  160 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 633
            MGV   + E  ST+ P KL+K      D ++PKV+ +  + VE+I G+GGPG+IKK + +E     Y  H +DA+D+ N  YNY  + G G     +++ V++E+ ++   DGGS   + +K++ K  A + +        K  G+ KA+E Y LANP
Sbjct:    1 MGVFVFDDEYVSTVAPPKLYKALAKDADEIVPKVIKEA-QGVEIIEGNGGPGTIKKLSILEDGKTNYVLHKLDAVDEANFGYNYSLVGGPGLHE--SLEKVAFETIILAGSDGGSIVKISVKYHTKGDAALSDAVRDETKAKGTGLIKAIEGYVLANP 155          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: RAP_TAROF (Root allergen protein OS=Taraxacum officinale PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 56/152 (36.84%), Postives = 84/152 (55.26%), Query Frame = -3
Query:  154 EDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 609
            E TS+L P  +FK FV+ FDT+ PK  P+  K+++ I GDGG G+IK   + +G  +   KH VDA+D  N   +Y     EGD  +  I+  ++  K + + DGGS     + F  K  A++ +E V    E  K  FKA+E Y +++P A
Sbjct:    7 EITSSLSPSNIFKAFVIDFDTIAPKAEPETYKSIKTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTIF--EGDVLMGIIESGTHHLKFLPSADGGSVYKHSMVFKCKGDAKLTDENVSLMKEGLKKTFKAIETYVISHPEA 156          
The following BLAST results are available for this feature:
BLAST of FC876490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
L18A_LUPLU2.309e-2437.50Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV... [more]
L18B_LUPLU5.686e-2335.85Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV... [more]
RNS1_PANGI9.699e-2340.51Ribonuclease 1 OS=Panax ginseng PE=1 SV=1[more]
PR13_PETCR2.822e-2239.49Pathogenesis-related protein B OS=Petroselinum cri... [more]
PR11_PETCR2.822e-2239.49Pathogenesis-related protein A OS=Petroselinum cri... [more]
PRS2_SOLTU4.814e-2237.89Pathogenesis-related protein STH-2 OS=Solanum tube... [more]
ALL2_APIGR8.211e-2240.25Major allergen Api g 2 OS=Apium graveolens PE=1 SV... [more]
PRS1_SOLTU1.829e-2137.27Pathogenesis-related protein STH-21 OS=Solanum tub... [more]
ABR17_PEA2.389e-2135.44ABA-responsive protein ABR17 OS=Pisum sativum PE=2... [more]
RAP_TAROF1.549e-2036.84Root allergen protein OS=Taraxacum officinale PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CD05RM1 EHR Citrus clementina cDNA clone KN0AAN2CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876490 ID=FC876490; Name=FC876490; organism=Citrus clementina; type=EST; length=704bp
TTTTTTTTTTTTATTTAACCAAAAGCCAATTATATAAATTGGCATATTTG
AAAACAAAGAGACACGACATACGGAAGCCATAAACATGATTATTCATAAT
GTTGCAACAAAGGCGACGCAAGTGCGGTGAAGTGTTGACGTAAAAGCTTA
TACGGCATTGGGGTTTGCCAAGGCATAGGCTTCCAAAGCCTTAAAAATTC
CCTTCTCCTTTTCCAAGCCTCCCTTAACCTGCTCTTCCTTAATCTCGGCA
CCTGGTTTGGGATAAAACTTGATAACAACGGTGCTCTTGCTTCCTCCGTC
AGGGGTGCCCACAACCTTACTCTCATAAGAAACATGATCAATAGTAGGGA
TGTTAGCATCACCCTCACCTTCAATTGCCGGGTAATTGTATATCTTGTTC
TCTTTGTCCAAGGCATCAACCCAATGCTTAAAGTACTTCCAATCAGCACC
TTCAACAAAGTTAAACTTCTTGATGCTTCCAGGGCCTCCATCCCCTGAAA
TCAATTCAACGTTCTTTACAACCTGAGGCAGGACTTTGGGCAGAAGGGTG
TCGAACTGAAGGACAAAAAGTTTGAACAACTTTTCAGGGGGGAGAGTGCT
TGTATCCTCTACATTCAACGTGAGAACACCCATGATTGTCTAAGAGTTAA
ACAAAGAAAGAAGATGAAAACTACCGATCAACTAAAATTGGGAAATTTTG
GGGG
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