FC876490

Overview
NameFC876490
Unique NameFC876490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:73..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: ALL1_APIGR (Major allergen Api g 1 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 60/157 (38.22%), Postives = 87/157 (55.41%), Query Frame = -3
Query:  163 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 633
            MGV T  +E TS++  EK+F+ FV+  DT+LPK  P   K+VE I GDGGPG++K     +G         +D ++KE   ++Y  I+G  D  +  I+ +     +V T DGGS       F+ K  A + EE +K   E+   +FKALEAY +AN
Sbjct:    1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDG--DILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: RNS2_PANGI (Ribonuclease 2 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = -3
Query:  163 GVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 630
            GV     +  S +P EKLFK   L  DT++PK  P+ +K+V+++ G+GG G+IK     +   +   K  +DA+D+    Y Y  I   GD  +  I+ +    K+V T DGGS  T    +     A I EE +K   +K   +FKA+EAY LAN
Sbjct:    1 GVQKTETQAISPVPAEKLFKGSFLDMDTVVPKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAIDEHAFTYTYTII--GGDILLDIIESIENHFKIVPT-DGGSTITQTTIYNTIGDAVIPEENIKDATDKSIQLFKAVEAYLLAN 153          
BLAST of FC876490 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = -3
Query:  163 MGVLTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGADWKYFKHWVDALDKENKIYNYPAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 633
            MG  + ++E TS++  EK+F   VL  DT++PK  P   K+VE + GDGG G+++     EG+         DA++KE   Y+   I+G  D  +  I+ +     VV T DGGS +     F+ K  A + EE +K    +   +FKA+EAY +AN
Sbjct:    1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVE-VKGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVIDG--DILLGFIESIETHLVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154          
The following BLAST results are available for this feature:
BLAST of FC876490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ALL1_APIGR2.022e-2038.22Major allergen Api g 1 OS=Apium graveolens PE=1 SV... [more]
RNS2_PANGI1.893e-1835.90Ribonuclease 2 OS=Panax ginseng PE=1 SV=1[more]
DAU1_DAUCA1.602e-1735.03Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CD05RM1 EHR Citrus clementina cDNA clone KN0AAN2CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876490 ID=FC876490; Name=FC876490; organism=Citrus clementina; type=EST; length=704bp
TTTTTTTTTTTTATTTAACCAAAAGCCAATTATATAAATTGGCATATTTG
AAAACAAAGAGACACGACATACGGAAGCCATAAACATGATTATTCATAAT
GTTGCAACAAAGGCGACGCAAGTGCGGTGAAGTGTTGACGTAAAAGCTTA
TACGGCATTGGGGTTTGCCAAGGCATAGGCTTCCAAAGCCTTAAAAATTC
CCTTCTCCTTTTCCAAGCCTCCCTTAACCTGCTCTTCCTTAATCTCGGCA
CCTGGTTTGGGATAAAACTTGATAACAACGGTGCTCTTGCTTCCTCCGTC
AGGGGTGCCCACAACCTTACTCTCATAAGAAACATGATCAATAGTAGGGA
TGTTAGCATCACCCTCACCTTCAATTGCCGGGTAATTGTATATCTTGTTC
TCTTTGTCCAAGGCATCAACCCAATGCTTAAAGTACTTCCAATCAGCACC
TTCAACAAAGTTAAACTTCTTGATGCTTCCAGGGCCTCCATCCCCTGAAA
TCAATTCAACGTTCTTTACAACCTGAGGCAGGACTTTGGGCAGAAGGGTG
TCGAACTGAAGGACAAAAAGTTTGAACAACTTTTCAGGGGGGAGAGTGCT
TGTATCCTCTACATTCAACGTGAGAACACCCATGATTGTCTAAGAGTTAA
ACAAAGAAAGAAGATGAAAACTACCGATCAACTAAAATTGGGAAATTTTG
GGGG
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