FC876495

Overview
NameFC876495
Unique NameFC876495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.461e-12
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = -2
Query:  447 FQGKAATAVANSLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 743
            +  +A TA+  ++N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   90 YGSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.908e-12
Identity = 36/117 (30.77%), Postives = 63/117 (53.85%), Query Frame = -2
Query:  375 TAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHG 725
            +A A ++N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N++     FR+Q  +    +W +N                      CHG
Sbjct:   97 SAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.251e-12
Identity = 34/99 (34.34%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  447 FQGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 743
            +  +A TA+  ++N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   90 YGSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.551e-12
Identity = 35/99 (35.35%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  447 FQGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 743
            +  +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   90 YGSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI 187          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 35/99 (35.35%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  447 FQGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 743
            +  +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   90 YGSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 35/99 (35.35%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  447 FQGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 743
            +  +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   90 YGSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.250e-12
Identity = 35/99 (35.35%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  447 FQGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 743
            +  +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   90 YGSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876495 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = -2
Query:  450 LKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 683
            L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L+S++  F+     ++RK+W QN
Sbjct:  112 LEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
The following BLAST results are available for this feature:
BLAST of FC876495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VAMP7_CHICK1.461e-1238.61Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VA712_ARATH1.908e-1230.77Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_RAT4.251e-1234.34Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_MOUSE5.551e-1235.35Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_PONAB7.250e-1235.35Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAMP7_HUMAN7.250e-1235.35Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN7.250e-1235.35Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAM7A_DICDI8.016e-1144.87Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CD12RM1 EHR Citrus clementina cDNA clone KN0AAN2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876495 ID=FC876495; Name=FC876495; organism=Citrus clementina; type=EST; length=798bp
GCACGAGGCTCGAGTTTTTTTTTTTTTTTTTTTTCTGCAGGTATCCAACT
ATTGTTCCATTACATCTTAAACTAAAATCCACATAAAGCAGCAGGCAGCA
TAAAACAACAGCAGGCAGCATAAAATATTTATCTATTTCGAGGAGTTCAA
GCATATAACCTATACAAGCAATCGAAAAGATACAAATTCATTCCCTTGCC
AAGGGGCAAGTAAGGGCATGATGACCTAAAAGAGGGGAAAAAGAAAACAT
AAACAAAAACAAGCGTGAGAGATGCAAGGATCAAAAGATGTGGCCAATGT
ACCAAGTCGACCATGTCAGCGGGACAGCAAAGCACAGTTTCCAGGGACTT
TCCAAGACCAAATCAACATTTGAAGCCATGGCAAACTGACAGAACGATGA
TAAGGATCAATGCGATGATGATACCCAAAACGATCAATTTAATCTTCATA
TTCTGGATCCACATCTTCCTTCTCATCTTCGTCCCCTGTTGTCGGAAATC
TTGTGCCTGTGACCGAAGGTTCTCAGTTTTGTCAACCAGCAGCTCAATCT
TCTCACCACGATCAAGAACCTTCTCAATATTTTCCATCATAACCCCCTTG
ACTTCAGAAACCTGAGCTTTGACTTTGGCAAGCTTGCTGATCTCTTCAGG
ATGATCCACACAATACTGCATGTGCTCCTTTAGTTTAGACCCAAACTCTT
TGTTCAGGCTATTTGCAACAGCCGTTGCAGCTTTTCCTTGAAAGGGCTGG
ATGGCATTCAGGGTCCAGTCTATGTGGGAACTGGGTTGTTGTTTCAAC
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