FC876497

Overview
NameFC876497
Unique NameFC876497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.278e-24
Identity = 77/274 (28.10%), Postives = 133/274 (48.54%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYD------IARLEDEIDHLSAAAEEELRKKK---TVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXV----------YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGAT 786
            WR ++G+S +P  +QF  + F+P++PR+  MK D  +A  VL + Y       I R  +E+  L+ +   +   +K   T++ L    S  +R                  N++MY+S TI +  GF+++           GTN + T+V  + ID  GR+ + L  L G+ ++LV+ S AF          V          +G + ++ + ++ AF+A G+G VPW   SE++P+  RGI    +   NW  +L++A TFLT+ + +    T
Sbjct:  245 WRILVGLSLIPTAVQFTCLCFLPDTPRYYVMKGDLARATEVLKRSYTDTSEEIIERKVEELVTLNQSIPGKNVPEKVWNTIKELHTVPSN-LRALIIGCGLQAIQQFTGW-NSLMYFSGTIFETVGFKNSSAVSIIVS---GTNFIFTLVAFFSIDKIGRRTILLIGLPGMTMALVVCSIAFHFLGIKFDGAVAVVVSSGFSSWGIVIIVFIIVFAAFYALGIGTVPWQ-QSELFPQNVRGIGTSYATATNWAGSLVIASTFLTMLQNITPAGT 512          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR1_PIG (Solute carrier family 2, facilitated glucose transporter member 1 (Fragment) OS=Sus scrofa GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.281e-24
Identity = 74/252 (29.37%), Postives = 121/252 (48.02%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +L V  +PA++Q VL+ F PESPR+L +  ++E +A  VL K+   A +  ++  +   + + +R+KK V  L++F+S   R                 IN V YYS +I + AG Q               N   T+V +++++  GR+ L L  LAG+    VL++ A               +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   NW SN IV   F  V +L G
Sbjct:  145 WPLLLSVIFIPALLQCVLLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTRDLQEMKEESRQMMREKK-VTILELFRSAAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGI---VNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALALLEQLPWMSYLSIVAIFG---FVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCG 389          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR1_SHEEP (Solute carrier family 2, facilitated glucose transporter member 1 (Fragment) OS=Ovis aries GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.592e-24
Identity = 73/252 (28.97%), Postives = 121/252 (48.02%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +L V  +PA++Q +L+ F PESPR+L +  ++E +A  VL K+   A +  ++  +   + + +R+KK V  L++F+S   R                 IN V YYS +I + AG Q               N   T+V +++++  GR+ L L  LAG+    VL++ A               +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   NW SN IV   F  V +L G
Sbjct:   84 WPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTRDLQEMKEESRQMMREKK-VTILELFRSAAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGI---VNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALALLEQLPWMSYLSIVAIFG---FVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCG 328          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR1_RAT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Rattus norvegicus GN=Slc2a1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.592e-24
Identity = 73/252 (28.97%), Postives = 120/252 (47.62%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +L V  +PA++Q +L+ F PESPR+L +  ++E +A  VL K+   A +  ++  +     + +R+KK V  L++F+S   R                 IN V YYS +I + AG Q               N   T+V +++++  GR+ L L  LAG+    VL++ A               +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   NW SN IV   F  V +L G
Sbjct:  186 WPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTRDLQEMKEEGRQMMREKK-VTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGI---VNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALALLEQLPWMSYLSIVAIFG---FVAFFEVGPGPIPWFIVAELFSQGPRPAAVAVAGFSNWTSNFIVGMCFQYVEQLCG 430          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR1_BOVIN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Bos taurus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.592e-24
Identity = 73/252 (28.97%), Postives = 121/252 (48.02%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +L V  +PA++Q +L+ F PESPR+L +  ++E +A  VL K+   A +  ++  +   + + +R+KK V  L++F+S   R                 IN V YYS +I + AG Q               N   T+V +++++  GR+ L L  LAG+    VL++ A               +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   NW SN IV   F  V +L G
Sbjct:  186 WPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTRDLQEMKEESRQMMREKK-VTILELFRSAAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGI---VNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALALLERLPWMSYLSIVAIFG---FVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCG 430          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR2_MOUSE (Solute carrier family 2, facilitated glucose transporter member 2 OS=Mus musculus GN=Slc2a2 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 67/255 (26.27%), Postives = 123/255 (48.24%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLA---LYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +LG+SAVPA++Q +L+LF PESPR+L++K ++E +A   L ++     +  +I+ +    EE   ++K V  + +F     R                 IN + YYS +I Q AG                 N + T V + L++  GR+ L L+ + G+    + +S   +          + W++ + +    L+++FF  G GP+PW + +E + +  R     ++A  NW+ N ++A  F  +A+ +G
Sbjct:  217 WHILLGLSAVPALLQCLLLLFCPESPRYLYIKLEEEVRAKKSLKRLRGTEDVTKDINEMKKEKEEASTEQK-VSVIQLFTDANYRQPILVALMLHMAQQFSGINGIFYYSTSIFQTAGISQ---PVYATIGVGAINMIFTAVSVLLVEKAGRRTLFLTGMIGMFFCTIFMSVGLVLLDK------FAWMSYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPTALALAAFSNWVCNFVIALCFQYIADFLG 461          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR2_HUMAN (Solute carrier family 2, facilitated glucose transporter member 2 OS=Homo sapiens GN=SLC2A2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 70/252 (27.78%), Postives = 121/252 (48.02%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +LG+S V AI+Q +L+ F PESPR+L++K D+E KA   L ++     +  +I+ +    EE   ++K V  + +F +   R                 IN + YYS +I Q AG                 N V T V ++L++  GR+ L L  ++G+ +  + +S   +            ++++I + L+++FF  G GP+PW + +E + +  R     ++A  NW  N IVA  F  +A+  G
Sbjct:  218 WHILLGLSGVRAILQSLLLFFCPESPRYLYIKLDEEVKAKQSLKRLRGYDDVTKDINEMRKEREEASSEQK-VSIIQLFTNSSYRQPILVALMLHVAQQFSGINGIFYYSTSIFQTAGISK---PVYATIGVGAVNMVFTAVSVFLVEKAGRRSLFLIGMSGMFVCAIFMSVGLVLLNKFSWM---SYVSMIAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPAALAIAAFSNWTCNFIVALCFQYIADFCG 462          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR1_MOUSE (Solute carrier family 2, facilitated glucose transporter member 1 OS=Mus musculus GN=Slc2a1 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 7.303e-24
Identity = 73/252 (28.97%), Postives = 120/252 (47.62%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +L V  +PA++Q +L+ F PESPR+L +  ++E +A  VL K+   A +  ++  +     + +R+KK V  L++F+S   R                 IN V YYS +I + AG Q               N   T+V +++++  GR+ L L  LAG+    VL++ A               +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   NW SN IV   F  V +L G
Sbjct:  186 WPLLLSVIFIPALLQCILLPFCPESPRFLLINRNEENRAKSVLKKLRGTADVTRDLQEMKEEGRQMMREKK-VTILELFRSPAYRQPILIAVVLQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGI---VNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALALLERLPWMSYLSIVAIFG---FVAFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCG 430          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR2_CHICK (Solute carrier family 2, facilitated glucose transporter member 2 OS=Gallus gallus GN=SLC2A2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.538e-24
Identity = 72/256 (28.12%), Postives = 117/256 (45.70%), Query Frame = 1
Query:   22 WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKK-----KTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG 774
            W  +LG+S V A++QF L+L  PESPR+L++K  K     V      + RL    D +   AE E  K+     K V    +F S + R                 IN + YYS  I Q AG                 N V T++ ++L++  GR+ L L+ L G++IS V ++   +            +++++ + L++ FF  G GP+PW + +E++ +  R     ++   NW  N IV   F  +A+L G
Sbjct:  230 WPLLLGLSGVAALLQFFLLLLCPESPRYLYIKLGK-----VEEAKKSLKRLRGNCDPMKEIAEMEKEKQEAASEKRVSIGQLFSSSKYRQAVIVALMVQISQQFSGINAIFYYSTNIFQRAGVGQPVYATIGVGV---VNTVFTVISVFLVEKAGRRSLFLAGLMGMLISAVAMTVGLVLLSQFAWM---SYVSMVAIFLFVIFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFCNWACNFIVGMCFQYIADLCG 474          
BLAST of FC876497 vs. ExPASy Swiss-Prot
Match: GTR1_CHICK (Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.538e-24
Identity = 70/258 (27.13%), Postives = 123/258 (47.67%), Query Frame = 1
Query:    7 GVPGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKE-KAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXXXINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGT 777
            G    W  +LG   VPA++Q +++ F PESPR+L +  ++E KA  VL K+     +  ++  +   + + +R+KK V  +++F+S   R                 IN V YYS +I + +G +               N   T+V +++++  GR+ L L  LAG+    +L++ A               +A+ G   ++AFF  G GP+PW + +E++ +  R     ++   NW SN IV   F  +A+L G+
Sbjct:  180 GNDSLWPLLLGFIFVPALLQCIILPFAPESPRFLLINRNEENKAKSVLKKLRGTTDVSSDLQEMKEESRQMMREKK-VTIMELFRSPMYRQPILIAIVLQLSQQLSGINAVFYYSTSIFEKSGVEQPVYATIGSGV---VNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALTLLDQMPWMSYLSIVAIFG---FVAFFEIGPGPIPWFIVAELFSQGPRPAAFAVAGLSNWTSNFIVGMGFQYIAQLCGS 430          
The following BLAST results are available for this feature:
BLAST of FC876497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ITR1_YEAST3.278e-2428.10Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
GTR1_PIG4.281e-2429.37Solute carrier family 2, facilitated glucose trans... [more]
GTR1_SHEEP5.592e-2428.97Solute carrier family 2, facilitated glucose trans... [more]
GTR1_RAT5.592e-2428.97Solute carrier family 2, facilitated glucose trans... [more]
GTR1_BOVIN5.592e-2428.97Solute carrier family 2, facilitated glucose trans... [more]
GTR2_MOUSE7.303e-2426.27Solute carrier family 2, facilitated glucose trans... [more]
GTR2_HUMAN7.303e-2427.78Solute carrier family 2, facilitated glucose trans... [more]
GTR1_MOUSE7.303e-2428.97Solute carrier family 2, facilitated glucose trans... [more]
GTR2_CHICK9.538e-2428.13Solute carrier family 2, facilitated glucose trans... [more]
GTR1_CHICK9.538e-2427.13Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CE02RM1 EHR Citrus clementina cDNA clone KN0AAN2CE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876497 ID=FC876497; Name=FC876497; organism=Citrus clementina; type=EST; length=871bp
GCACGAGGGGTCCCTGGAACATGGAGATGGATGCTTGGAGTATCAGCTGT
GCCAGCTATCATTCAGTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCTA
GATGGCTTTTCATGAAGAGTGACAAAGAAAAAGCCATTTTGGTTCTTTCT
AAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAGC
TGCTGCAGAGGAAGAACTCCGAAAAAAGAAAACTGTCAGATACTTGGATG
TTTTTAAATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACTT
CAGGCATTTCAGCAGTTCACTGGTATCAACACAGTCATGTACTACAGCCC
GACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCAGCTAGCGCTTCTCC
TATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAATT
TATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAGC
TGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGAT
CATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCAGTCATCGGGTTA
GCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGAC
TCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGTA
TGTCAGCTACTGTGAACTGGATCTCAAATTTGATCGTGGCCCAAACCTTC
CTGACGGTTGCTGAACTAGTGGGCACTGGAGCCACTTTCTTGATTCTTGC
TGGCCTTGCTGTACTTGCAGTTGTGTTTGTGATTCTGTTTGTGCCAAAAA
CTCAGGGACTGACATTTTTGG
back to top