FC876499

Overview
NameFC876499
Unique NameFC876499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10373 contig Ccv1_Contig10373:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_SYNS9 (Protein grpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22
Identity = 50/119 (42.02%), Postives = 80/119 (67.23%), Query Frame = 1
Query:  472 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            LE+++ +L +E  A +++ +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ Q+  + E  + ++ SYQ +YKQLV++L   GV  +E VG  FDP LHEA++RE++
Sbjct:   54 LEQELNSLKQEHEAVQSQYMRIAADFDNFRKRQARDQDDLRQQLVCSTLTEILPVVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQEFDPTLHEAVLREEN 172          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_SYNPX (Protein grpE OS=Synechococcus sp. (strain WH8102) GN=grpE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 49/119 (41.18%), Postives = 78/119 (65.55%), Query Frame = 1
Query:  472 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            LE ++  L +E    +++ +RI+ADFDNFRKR  +++  +        +  +L V+DNFERA+ Q+  ++E  + ++ SYQ +YKQLV++L   GV  +E VG  FDP LHEA++RE+S
Sbjct:   49 LEHELQTLKQEHETLQSQYMRIAADFDNFRKRQSRDQEDIRQQLVCSTLSEILPVVDNFERARQQLNPESEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQLFDPTLHEAVLREES 167          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROMP (Protein grpE OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=grpE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  454 EDEKI---DLERKVVN-------LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            +DE I   DL+  + N       L +E    +++ +RI+ADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q+K ++E  + ++ SYQ +YKQLVE+L   GV P+  V   FDP LHEA++RE S
Sbjct:   43 DDENIYAEDLKNTITNNDARLEQLEKEHETLKSQYVRIAADFDNFRKRQSRDQDDLKVQLVSKALTAILPIVDNFERARQQLKPESEEAQTLHRSYQGLYKQLVEVLKQQGVSPMRVVAQQFDPKLHEAVLREPS 177          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_SYNJA (Protein grpE OS=Synechococcus sp. (strain JA-3-3Ab) GN=grpE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 60/173 (34.68%), Postives = 97/173 (56.07%), Query Frame = 1
Query:  367 METLQSYKEALASNDDTKAAEIEALLKSFEDEKI------------DLERKVVNLSEELSAERARI-------LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            M T  +Y E      D +A   + +L+  E E              DL   +  L +EL   R ++       +R+ ADF+N+R+RT++E+       + + +  +L V+D+FERA+ Q+K++T+ E  ++NSYQS+Y+ LVE L  +GV  +++VG PFDP LHEAI R+ S
Sbjct:    1 MPTEDAYPELQEEEIDVEAELEKLILEDREAEASTSSGEASAEASQDLSETLKQLQQELEITRQQLKEKEESYIRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQLKLETDREREVHNSYQSVYRLLVECLKKMGVSRMKSVGQPFDPNLHEAIARQPS 173          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_SYNSC (Protein grpE OS=Synechococcus sp. (strain CC9605) GN=grpE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.152e-21
Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  457 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            D    LE+++  L +E     ++ +RI+ADFDNFRKR  +++  +        +  +L V+DNFERA+ Q+  + E  + ++ SYQ +YKQLVE+L   GV  ++ VG  FDP LHEA++RE+S
Sbjct:   45 DRMQQLEQELSALKQEHDTLNSQYMRIAADFDNFRKRQSRDQDDMRKQLVCSTLTEILPVVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKQQGVARMDVVGQEFDPNLHEAVLREES 168          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_SYNJB (Protein grpE OS=Synechococcus sp. GN=grpE PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.152e-21
Identity = 48/119 (40.34%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  472 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            L+ ++  + ++L  +    LR+ ADF+N+R+RT++E+       + + +  +L V+D+FERA+ Q+K++T+ E  ++NSYQS+Y+ LVE L  +GV  +++VG PFDP LHEAI R+ S
Sbjct:   55 LQHELEVVRQQLKEKEDAYLRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQLKLETDRERELHNSYQSVYRLLVECLKKMGVSRMKSVGQPFDPNLHEAIARQPS 173          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_ANOFW (Protein grpE OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=grpE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.498e-18
Identity = 52/155 (33.55%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  370 ETLQSYKEAL---ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRED 825
            ETL+ +++A    A  +  +  E EA  +  +DE      K+  L  +L+    R LR+ ADFDN+R+R   +  +        ++  LL +LDNFERA  Q++V+ E  + +    + +Y+ L+E L   GV  +E+VG PFDP +H+A+M+ D
Sbjct:   17 ETLEQHEDAQSEQAPEEQVEQVENEATQQEEKDELTVAYEKIAQLEAKLAETENRFLRLHADFDNYRRRVRLDMEAAEKYRAQSLVSDLLPILDNFERA-LQVQVEDEKAKLLLQGMEMVYRSLIEALKKEGVEAIESVGKPFDPHVHQAVMQVD 170          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CLOPH (Protein grpE OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=grpE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.607e-17
Identity = 53/147 (36.05%), Postives = 79/147 (53.74%), Query Frame = 1
Query:  385 YKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRED 825
            Y+E  AS D +K        KSF  +K   ++K     E++     R++R  A+F+NFRKRTEKE+  +      +++ER+L V+DNFER    + V+ E +       + IYKQLV  L + GV  +E  G  FDP  H A+M  +
Sbjct:   56 YEEDTASEDGSKEK------KSFFKKKEKKDKK----DEKIDELTDRLMRNMAEFENFRKRTEKEKTQMFEVGAKDIIERILPVIDNFERGLAAVSVE-EKDSAFVQGIEKIYKQLVTTLEAAGVKQIEAAGKEFDPDFHNAVMHAE 191          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACTR (Protein grpE OS=Bacillus thermoglucosidasius GN=grpE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.035e-17
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  343 EEAPTSFIMETLQS--YKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARI--------------LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            +E+P +   E L+   ++E  A  +  K  E      + +DE  D E+     +EEL+A  A+I              LR+ ADF+NFR+RT +E  +        ++  LL VLDNFERA  +IK + E  + I    + +Y+ +++ L   GV  +E VG PFDP LH+A+M+ EDS
Sbjct:   16 QESPNAERQEELKENEHQEKNAPEEQEKVREENGRQDAQKDEIGDPEKAKEEQNEELAAANAKIAELEAKIKEMENRYLRLYADFENFRRRTRREMEAAEKYRAQSLVSDLLPVLDNFERA-LKIKAEDEQAKSILQGMEMVYRSVLDALKKEGVEAIEAVGKPFDPHLHQAVMQVEDS 193          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_GEOTN (Protein grpE OS=Geobacillus thermodenitrificans (strain NG80-2) GN=grpE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 52/146 (35.62%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  394 ALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE--XINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRED 825
            A  + D  +   +EA      +E    + +V  L E+L+    R LR+ ADF+NFR+R  +E  +        +   LL VLDNFERA   +K++TE E+   I    + +Y+ L++ L   GV  +E VG PFDP LH+A+M+ D
Sbjct:   51 ASTTADPAEQTSVEA------EELAKAKAQVAELEEKLAEMEKRYLRLYADFENFRRRARQEMEAAEKYRAQSLASDLLPVLDNFERA---LKIETENEQAKSILQGVEMVYRSLLDALRKEGVEVIEAVGKPFDPHLHQAVMQTD 187          
The following BLAST results are available for this feature:
BLAST of FC876499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRPE_SYNS96.351e-2242.02Protein grpE OS=Synechococcus sp. (strain CC9902) ... [more]
GRPE_SYNPX8.295e-2241.18Protein grpE OS=Synechococcus sp. (strain WH8102) ... [more]
GRPE_PROMP8.295e-2240.00Protein grpE OS=Prochlorococcus marinus subsp. pas... [more]
GRPE_SYNJA1.415e-2134.68Protein grpE OS=Synechococcus sp. (strain JA-3-3Ab... [more]
GRPE_SYNSC3.152e-2140.32Protein grpE OS=Synechococcus sp. (strain CC9605) ... [more]
GRPE_SYNJB3.152e-2140.34Protein grpE OS=Synechococcus sp. GN=grpE PE=3 SV=... [more]
GRPE_ANOFW2.498e-1833.55Protein grpE OS=Anoxybacillus flavithermus (strain... [more]
GRPE_CLOPH3.607e-1736.05Protein grpE OS=Clostridium phytofermentans (strai... [more]
GRPE_BACTR8.035e-1734.08Protein grpE OS=Bacillus thermoglucosidasius GN=gr... [more]
GRPE_GEOTN3.053e-1635.62Protein grpE OS=Geobacillus thermodenitrificans (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CE04RM1 EHR Citrus clementina cDNA clone KN0AAN2CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876499 ID=FC876499; Name=FC876499; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGCATAAAAACGCCGCCGTTTCACGCATCTTCTCTTCCCGCCAC
ACGTGCAGCCCCCATTTCCTTAAAATCTCCGAAACCCATCTGTATTTCCT
TCAGACAACGTCTAATAAGCACCAGCAGACTTTATCATCGGTCAAATTCT
CTCCGGTTCGTAAGTGTTCAGTCTCTCCGGTTCGTAAAGTTCTCTCCTTT
AGCTTCAACTGGAGAAACTGAAACCCAAGAGGAAATTCAGGAACCCCAAA
TTGAGGAATCTTCCGATGGTGCTGTTGGCATTGAAGATGGCACTAGTGAC
GATGATAGCTCTGGAGCTACTAGTGATGACACCTCAGATGCTGAGGAAGC
ACCTACTTCATTCATTATGGAAACACTCCAATCATACAAAGAAGCTTTGG
CCAGTAATGACGATACCAAAGCTGCTGAAATAGAGGCTTTATTAAAATCC
TTTGAAGATGAGAAAATTGATCTTGAGAGGAAAGTTGTTAACTTGTCTGA
AGAATTGTCAGCTGAGAGGGCTCGTATTCTTAGGATCAGTGCTGACTTTG
ACAATTTTCGTAAGAGAACGGAGAAGGAACGCCTTTCACTGGTAACAAAT
GCTCAAGGAGAAGTCATGGAGAGATTGTTGCAAGTTTTGGATAATTTTGA
GAGAGCTAAAACTCAAATTAAGGTGCAGACCGAGGGAGAGGAGNAAATAA
ACAACAGCTATCAGAGCATATATAAGCAATTAGTGGAAATCCTANGATCA
CTTGGTGTTGTTCCTGTGGAGACGGTTGGGAATCCTTTTGATCCATTGCT
TCACGAAGCAATTATGCGCGAGGATTCCA
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