FC876499

Overview
NameFC876499
Unique NameFC876499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10373 contig Ccv1_Contig10373:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_THESQ (Protein grpE OS=Thermotoga sp. (strain RQ2) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  454 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            E EK +L ++   L E+         R+ A+++N+R+   +E+  L+ NA   ++ +L+ VLD+FERA      Q E  +      + IYK+L+ +L   G+  +  VG  FDP  HEA+ R ++
Sbjct:    3 EKEKKELTQECEELKEKYKELEEYAKRLKAEYENYREEVAREKRELIKNANEYLISKLIPVLDDFERALN----QGEKGDAFYEGVKMIYKKLLNVLEKEGLTKIH-VGEKFDPFEHEAVERVET 122          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_THEMA (Protein grpE OS=Thermotoga maritima GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 39/125 (31.20%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  454 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            E EK +L ++   L E+         R+ A+++N+R+   +E+  L+ NA   ++ +L+ VLD+FERA      Q E  +      + IYK+L+ +L   G+  +  VG  FDP  HEA+ R ++
Sbjct:    3 EKEKKELTQECEELKEKYKELEEYAKRLKAEYENYREEVAREKRELIKNANEYLISKLIPVLDDFERALN----QGEKGDAFYEGVKMIYKKLLNVLEKEGLTKIH-VGEKFDPFEHEAVERVET 122          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_RUBXD (Protein grpE OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 48/150 (32.00%), Postives = 71/150 (47.33%), Query Frame = 1
Query:  400 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR-------ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            AS ++    E  A     E  K   E ++  L EEL A R         + R+ A+F+N RKR E+E   +   A   ++  LL VLDN +RA        E E  I    ++   QL ++L   G+ P+ + G  FDP +HEA+M + S
Sbjct:   33 ASVEENAPPEASAETAPEEAGKEVREEELAKLREELEAVRRERDEYLDALRRLKAEFENSRKRMEREAQRIREAAAERLVAELLPVLDNLDRA-------LEAEGDIREGVRATRDQLTDVLSREGLTPIASDGQHFDPSVHEAVMSQPS 175          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_METTP (Protein grpE OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 42/150 (28.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  382 SYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERA-RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            S K    + +D ++A  E   +    +++   R+ +   + ++ ER  ++LR  A+ DN  KR  +ER  L   A   ++++LL  LD+ E+A              +   +++Y QL++I+ S G+ P++ VG  FDP +HEA+M+ +S
Sbjct:    6 SEKSVEGTEEDGESAPAEGTTEGVPVDEVAKLRQELEDVKRIADERLEQLLRCRAELDNVIKRNSREREELARFASEAIIKKLLVFLDSLEQAAKH-----------DEGAKALYDQLLDIMRSEGLEPIDAVGKKFDPFVHEAMMQVES 144          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_STAAB (Protein grpE OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 40/155 (25.81%), Postives = 85/155 (54.84%), Query Frame = 1
Query:  379 QSYKEALASNDDTKAAEIEALLKSFEDE----KIDLERKVVNLSEELSAERA-RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            Q+  +++   +++K    +  ++   DE    +ID + + +N  ++L+ E   + LR+ A+F+N+++R +KE     T     V+  +L  +DN ERA  QI+   E  + +    Q +++ L+  L   G+  ++T G  FDP +H+A++++D+
Sbjct:   23 QNIDDSVEQTEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDN 176          
The following BLAST results are available for this feature:
BLAST of FC876499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRPE_THESQ6.588e-1131.20Protein grpE OS=Thermotoga sp. (strain RQ2) GN=grp... [more]
GRPE_THEMA6.588e-1131.20Protein grpE OS=Thermotoga maritima GN=grpE PE=3 S... [more]
GRPE_RUBXD6.588e-1132.00Protein grpE OS=Rubrobacter xylanophilus (strain D... [more]
GRPE_METTP6.588e-1128.00Protein grpE OS=Methanosaeta thermophila (strain D... [more]
GRPE_STAAB8.604e-1125.81Protein grpE OS=Staphylococcus aureus (strain bovi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CE04RM1 EHR Citrus clementina cDNA clone KN0AAN2CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876499 ID=FC876499; Name=FC876499; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGCATAAAAACGCCGCCGTTTCACGCATCTTCTCTTCCCGCCAC
ACGTGCAGCCCCCATTTCCTTAAAATCTCCGAAACCCATCTGTATTTCCT
TCAGACAACGTCTAATAAGCACCAGCAGACTTTATCATCGGTCAAATTCT
CTCCGGTTCGTAAGTGTTCAGTCTCTCCGGTTCGTAAAGTTCTCTCCTTT
AGCTTCAACTGGAGAAACTGAAACCCAAGAGGAAATTCAGGAACCCCAAA
TTGAGGAATCTTCCGATGGTGCTGTTGGCATTGAAGATGGCACTAGTGAC
GATGATAGCTCTGGAGCTACTAGTGATGACACCTCAGATGCTGAGGAAGC
ACCTACTTCATTCATTATGGAAACACTCCAATCATACAAAGAAGCTTTGG
CCAGTAATGACGATACCAAAGCTGCTGAAATAGAGGCTTTATTAAAATCC
TTTGAAGATGAGAAAATTGATCTTGAGAGGAAAGTTGTTAACTTGTCTGA
AGAATTGTCAGCTGAGAGGGCTCGTATTCTTAGGATCAGTGCTGACTTTG
ACAATTTTCGTAAGAGAACGGAGAAGGAACGCCTTTCACTGGTAACAAAT
GCTCAAGGAGAAGTCATGGAGAGATTGTTGCAAGTTTTGGATAATTTTGA
GAGAGCTAAAACTCAAATTAAGGTGCAGACCGAGGGAGAGGAGNAAATAA
ACAACAGCTATCAGAGCATATATAAGCAATTAGTGGAAATCCTANGATCA
CTTGGTGTTGTTCCTGTGGAGACGGTTGGGAATCCTTTTGATCCATTGCT
TCACGAAGCAATTATGCGCGAGGATTCCA
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