FC876572

Overview
NameFC876572
Unique NameFC876572
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.556e-94
Identity = 153/268 (57.09%), Postives = 203/268 (75.75%), Query Frame = 1
Query:   13 KKEVIWSMMGGQTTKQGDCSKYK--GNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPN-RPMVQCTSHMCPIRVHWHVKLNYNEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSL 807
            +KEVIWSM G Q  +QGDCS  K   N+PH CKK PTVVDLLPG P + QIANCCK G +S+++QDP  + +SFQ+ VG +G +N+TVRVPKNF+L APGPGYTC  A + KP++F++ D RR TQ +MTWNV CTYSQFLAQK P+CCVSLSSF N+  V CPTC+CGC+N  + +G C+    P L S+++ PG+   +P++QCTSHMCP++++WH+ L   E++RVKIT+TN NY MN++ WNLVVQ+    ++TQ+  F YKS+
Sbjct:   79 QKEVIWSMYGAQAIEQGDCSMSKEGSNVPHSCKKHPTVVDLLPGAPIDLQIANCCKAGSLSAFSQDPANSAASFQIIVGHSGNSNETVRVPKNFSLMAPGPGYTCSRAMIVKPSRFLSPDGRRATQVLMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAPDLQSIIHGPGRWTWQPLLQCTSHMCPVKINWHLMLKDKEHYRVKITVTNLNYRMNFTEWNLVVQYHPILDITQISGFNYKSI 346          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: COBL6_ARATH (COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.923e-80
Identity = 138/270 (51.11%), Postives = 180/270 (66.67%), Query Frame = 1
Query:   16 KEVIWSMMGGQTTKQGDCSKY--KGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINP-KTPHLASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYNEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPY 816
            +EVIW M G +TT+QG+CS +   GN+PHCC + PT+VDLLPG   N Q+ANCC+GGV++S +QD    +S+F ++VG++    +   +P NF +  PG  Y+C  A    PTKF T   RR TQA+ TW   C YSQF +  +P CCVSLS+FY + IV CPTC+CGC      S  C+   + P      + P +   P+V+C+ HMCPIR+HWHVK+NY EYWRVKIT TNFN   NY+ WNLVV HPN  ++ Q+FSF YKSLTPY
Sbjct:   88 QEVIWDMKGAETTEQGNCSAFASSGNLPHCCLERPTIVDLLPGASLNVQVANCCRGGVLTSMSQDHANHVSAFHMTVGSSPDGPEEFNMPSNFDIGVPG--YSCDNATSVSPTKFSTDKGRRKTQALATWEAVCVYSQFRSSPSPKCCVSLSAFYYQNIVPCPTCSCGCS-----SSHCVKDGELPPYLEQKHDPDEEVSPVVKCSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMKNYTNWNLVVLHPNLKSVQQVFSFNYKSLTPY 350          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: COBL7_ORYSJ (COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 9.106e-74
Identity = 135/278 (48.56%), Postives = 175/278 (62.95%), Query Frame = 1
Query:    4 RGAKKEVIWSMMGGQTTKQGDCSKYKGNI-PHCCKKDPTVVDLLPGTPYNQQIANCCKGGVISSWAQDPTTALSSFQLSVGAAGTT-----NKTVRVPKNFTLKAPGPGYTCGPA-KVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYNEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPY 816
            R A  E+IW M G + T+QGDC + +G   PHCC+K P +VDL PGTPYN Q+++CC+GGV+SS  Q+  T+ ++FQ+ VG          ++   +P  F +  PG  Y+C  A KV   +       R      +TW VTCTYSQF+   +PTCCVSLSSFYN TIV CP C+CGC  + T        + P L +     G+   P+ +CT HMCP+RVHWHVK++Y EYWRVK+TITN+N   NYS WNLVVQHPN  +LTQLFSF Y+ L  Y
Sbjct:   70 RWAGNEIIWGMTGAEATEQGDCHRIRGATRPHCCEKQPVIVDLPPGTPYNNQVSSCCRGGVLSSLTQNNRTSTAAFQMVVGGFRRATYHDGDRGPALPSRFGVGVPG--YSCSNATKVNATSSERFLLPRARAPCAVTWQVTCTYSQFMEAASPTCCVSLSSFYNSTIVPCPRCSCGCPRSPTAPQCISEGEKPELPA---GDGEAVAPVFRCTDHMCPVRVHWHVKISYREYWRVKVTITNYNQVKNYSDWNLVVQHPNLRSLTQLFSFNYQPLIEY 342          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: COBL5_ARATH (COBRA-like protein 5 OS=Arabidopsis thaliana GN=COBL5 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.515e-44
Identity = 82/138 (59.42%), Postives = 103/138 (74.64%), Query Frame = 1
Query:    4 RGAKKEVIWSMMGGQTTKQGDCSKYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVISSWAQDPTTALSSFQLSVGAAGTTNKTVRVPKNFTLKAPGPGYTCGPAKVGKPTKFITSDKRRVTQAMMTWNVTCTY 417
            RG KKEVIW+M+G +TT QG CS +KGNIP  C + PTVVDLLPGTP+NQQIANCCK GV+   ++      S+FQLSVG+AG + KT R+P NF   AP   Y CGP+K  +PT+F T+DKRR+T A+MTWN+TC +
Sbjct:   69 RGTKKEVIWNMLGAKTTGQGGCSMFKGNIPQSCVRKPTVVDLLPGTPFNQQIANCCKSGVLKPGSE------SAFQLSVGSAGNSVKTARMPANFMFTAPKQQYICGPSKNVRPTRFTTADKRRITAALMTWNITCVF 200          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: COBL7_ARATH (COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.944e-21
Identity = 70/245 (28.57%), Postives = 110/245 (44.90%), Query Frame = 1
Query:  100 CKKDPTVVDLLPGTPYNQQ----IANCCKGGVISSWAQDPTTALSSFQLSVGAA--GTTNKTVRVPKNFTLKAP-GPGYTCGPAKVGKPTKFIT-SDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNN------GTESGSCINPKTPHLASVVN----------TPGKPNRPMVQCTSHMCPIRVHWHVKLNYNEYWRVKITITNFNYAMNYSLWNLVVQHPN 762
            C + PTV+DL P T YN      I  CC+ G I   + DP+ + S FQ+ V           +  P+N+ +     P Y CGP     P++F+  S       A  +W V C  +Q     +P CCVS S+++N++IV C TCACGC +N         + S + P+   L    N             +P    + C  + C + ++WH+  +Y   W  ++T+ N+    ++  W   VQ  N
Sbjct:  299 CARRPTVIDL-PPTKYNDSTFGLIPFCCRNGTILPRSMDPSKSSSVFQMQVYKMPPDLNISALSPPQNWRINGTLNPDYKCGPPVRVSPSQFVDPSGLPSNRTAFASWQVVCNITQ-PKDASPRCCVSFSAYFNDSIVPCKTCACGCSSNKAARACSATAPSLLLPQQALLVPFENRTELTVAWAYLKQRPVPNPMPCGDN-CGVSINWHLATDYRGGWTARVTVFNWG-ETDFVDWFTAVQMKN 539          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: COBL9_ARATH (COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 63/239 (26.36%), Postives = 103/239 (43.10%), Query Frame = 1
Query:  100 CKKDPTVVDLLPGTPYNQQIAN---CCKGGVISSWAQDPTTALSSFQLSVGAAGT--TNKTVRVPKNFTLKAP-GPGYTCGPAKVGKPTKFITSDKRRVTQAMM-TWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINP--------------KTPHLASVVNTPGKPNRPMVQCTSHMCPIRVHWHVKLNYNEYWRVKITITNFNYAMNYSLWNLVVQ 753
            C++ P ++DL P    +  + N   CC+ G I     DP+ ++S F + V           +  P+N+ +K    P Y+CGP     PT +         ++   +W + C  +Q   +  P CCVS S+F+N++I+ C TCACGC +    + S   P                  L    N       P        C + ++WH+  +Y   W V+ITI N+   +++  W L VQ
Sbjct:  298 CERRPIIIDLPPTKKDDSTLGNIPSCCRNGTILPRIMDPSKSVSVFTMQVAKMPPDFNRSALFPPQNWRIKGTLNPDYSCGPPVRVTPTFYPDPSGMPTNKSSFASWQIVCNITQAKTE-IPKCCVSFSAFFNDSIIPCNTCACGCVSETRRTCSAETPSLLIPPDALLLPFENRTALTLAWNALKHKTLPNPMPCGDNCGVSINWHMASDYRGGWTVRITIFNWG-EIDFPNWFLAVQ 534          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: CBL10_ARATH (COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 69/227 (30.40%), Postives = 99/227 (43.61%), Query Frame = 1
Query:  100 CKKDPTVVDLLPGTPYNQQIAN---CCKGGVISSWAQDPTTALSSFQLSV-GAAGTTNKTVRVPKNFTLKAPG---PGYTCGPAKVGKPTKFIT-SDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTE-----SGSCINPKTPHLASVVNTPGK----------PNRPMVQCTSHMCPIRVHWHVKLNYNEYWRVKITITNF 711
            C++ P + DL P    +        CCK G +     DP+ + S FQL V       N+T   P     K  G   P Y CGP     P++F   S    VT A+ +W V C  ++  AQ +  CCVS S+FYN + V C TCACGC +  T+     S   + P    L    N   K          P    + C  + C + ++WHV  +Y   W  ++T+ N+
Sbjct:  311 CQRKPAISDLPPEKKEDNMTGKLPFCCKNGTLLPPIMDPSKSRSMFQLQVFKLPPDLNRTALYPPQHW-KIDGVLNPQYKCGPPVRVDPSQFPDPSGLLAVTYAISSWQVVCNITKPKAQAS-RCCVSFSAFYNNSAVPCNTCACGCNDIDTDTCNANSNPLLLPPDALLVPFDNRTLKAKAWAKQNHMPVPKKLPCPDN-CGVSINWHVSTDYKNGWTARLTVFNW 534          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: COBL8_ARATH (COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.023e-16
Identity = 61/229 (26.64%), Postives = 105/229 (45.85%), Query Frame = 1
Query:  100 CKKDPTVVDLLPGTPYNQ----QIANCCKGGVISSWAQDPTTALSSFQLSVGAA--GTTNKTVRVPKNFTLKAP-GPGYTCGPAKVGKPTKFI-TSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPK----TPHLASVVNTPGK----------PNRPM---VQCTSHMCPIRVHWHVKLNYNEYWRVKITITNF 711
            C + P ++DL P T YN     +I  CC+ G I   + DP  + S FQ+ V          ++  P+++ +K    P Y CGP      ++F  TS       A  +W V C  +Q      P CCVS SS++N++++ C TCACG  ++   + +C         P+ A ++    +           NR +   + C  + C + ++WH+  +Y   W  ++T+ N+
Sbjct:  292 CARRPHIIDL-PLTKYNDTNVGRIPYCCRNGTILPRSMDPEKSKSVFQIEVYKMPPDLNISSITPPQSWQIKGNLNPDYKCGPPLRVSSSQFPDTSGLPSNKSAFASWQVVCNITQ---PTPPKCCVSFSSYFNDSVIPCKTCACGGCSSDRVARTCSTTSPALPLPYQALLIPFDNRTKLTNAWAVLKNRKVPDPLPCGDN-CGVSINWHLATDYRGGWTARVTLFNW 515          
BLAST of FC876572 vs. ExPASy Swiss-Prot
Match: CBL11_ARATH (COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.633e-16
Identity = 65/230 (28.26%), Postives = 102/230 (44.35%), Query Frame = 1
Query:  100 CKKDPTVVDLLPGTPYNQQIAN----CCKGGVISSWAQDPTTALSSFQLSV-GAAGTTNKTVRVP-KNFTLKA-PGPGYTCGPAKVGKPTKFIT-SDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVSCPTCACGCQNNGTESGSCINPKTPHLASVVNTPGKP--NRPM----------------VQCTSHMCPIRVHWHVKLNYNEYWRVKITITNF 711
            C+K P + DL P    +  +      CCK G +     DP+ + + FQL V       N+T   P +N+ +     P Y CGP      T F   S  +  T A+ +W V C  ++   Q    CCVS S+FYN++ + C TCACGC++  T++    N     L    +T   P  NR +                + C  + C I ++WH+  +Y   W  ++T+ N+
Sbjct:  301 CQKKPIIKDL-PAERKDDNVTGKLPFCCKNGTLLPTHMDPSKSKAIFQLQVYKVPPDQNRTAFFPPRNWKIDGIVNPTYKCGPPIRVDATPFPDPSGLQATTYAIASWQVICNITKPKPQAA-RCCVSFSAFYNDSAIPCNTCACGCKDIDTDT---CNANARQLLLPTDTLLVPFDNRTLKAKVWAKQKHMAYPKKLPCPDN-CGISLNWHLNSDYGNGWSARVTLFNW 524          
The following BLAST results are available for this feature:
BLAST of FC876572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
COBL4_ORYSJ3.556e-9457.09COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]
COBL6_ARATH2.923e-8051.11COBRA-like protein 6 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ORYSJ9.106e-7448.56COBRA-like protein 7 OS=Oryza sativa subsp. japoni... [more]
COBL5_ARATH1.515e-4459.42COBRA-like protein 5 OS=Arabidopsis thaliana GN=CO... [more]
COBL7_ARATH8.944e-2128.57COBRA-like protein 7 OS=Arabidopsis thaliana GN=CO... [more]
COBL9_ARATH7.571e-2026.36COBRA-like protein 9 OS=Arabidopsis thaliana GN=CO... [more]
CBL10_ARATH8.371e-1930.40COBRA-like protein 10 OS=Arabidopsis thaliana GN=C... [more]
COBL8_ARATH1.023e-1626.64COBRA-like protein 8 OS=Arabidopsis thaliana GN=CO... [more]
CBL11_ARATH6.633e-1628.26COBRA-like protein 11 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1AD03RM1 EHR Citrus clementina cDNA clone KN0AAN1AD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876572 ID=FC876572; Name=FC876572; organism=Citrus clementina; type=EST; length=816bp
GCACGAGGGGCAAAAAAGGAAGTCATCTGGAGCATGATGGGAGGACAAAC
CACAAAGCAAGGAGATTGTTCAAAATATAAAGGGAACATCCCACATTGCT
GCAAGAAGGATCCAACAGTTGTAGATTTGTTGCCGGGGACTCCATATAAC
CAGCAGATTGCAAATTGTTGCAAAGGGGGAGTAATAAGCTCCTGGGCACA
GGACCCAACTACTGCATTAAGCTCATTCCAGCTCAGTGTTGGTGCTGCAG
GAACAACTAACAAAACTGTCAGAGTACCCAAAAATTTCACACTTAAAGCC
CCAGGGCCTGGATATACTTGTGGACCTGCAAAAGTTGGTAAACCAACTAA
ATTCATTACGTCAGATAAGAGGAGAGTCACACAAGCTATGATGACCTGGA
ATGTCACATGCACATATTCACAGTTCTTGGCTCAAAAGACACCCACCTGT
TGTGTTTCTCTCTCTTCCTTCTACAATGAAACAATAGTAAGCTGCCCAAC
GTGTGCTTGTGGCTGTCAAAACAATGGAACGGAATCTGGGAGTTGCATAA
ATCCAAAGACTCCACATTTGGCATCAGTTGTGAATACTCCAGGAAAACCC
AACAGACCAATGGTTCAGTGTACCAGCCATATGTGTCCCATCCGAGTTCA
TTGGCATGTCAAGCTCAATTATAATGAGTACTGGCGTGTGAAGATCACAA
TCACTAATTTTAATTACGCAATGAATTACTCACTGTGGAATCTAGTCGTG
CAACACCCCAACTTTGATAATCTCACACAGCTTTTCAGCTTTTATTACAA
GTCATTAACTCCTTAT
back to top