FC876581

Overview
NameFC876581
Unique NameFC876581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.016e-47
Identity = 105/223 (47.09%), Postives = 138/223 (61.88%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD-----KETMEDWDQETLEKVVESKNKEYQQNK-PTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+ +      K +  KK+KI+EDKTFGLKNK  +K  QK++           QN +Q    + +++K                LN+LFK  V+  KV  GVDPKS+LC F+K GQC KG KCKFSHDL+++RK EK  +Y D RD     K+TME+WD++ LE+VV  K+ E ++ K  T IVCKYFL+A+E  +YGWFWVCP GG +  YRHAL  G V
Sbjct:    1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSLYVDGRDDELLEKDTMENWDEKKLEEVVNKKHGEAEKKKAKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPVGFV 217          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.583e-47
Identity = 94/203 (46.31%), Postives = 126/203 (62.07%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR---DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+  +A+ A K+K   DKTFG+KNKN+S  VQKY++ ++    PK ++ ++                  LF   V+  +V  GVDPKS++C  +K G C KG KCKFSHDLNV R+ EK D+Y D R   + +TM++WD+E L KV+ SK+        TD VCKYF+EAVE  +YGWFW+CPNGG    YRH+L  G V
Sbjct:    1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLNVGRRMEKKDLYQDTRSEKENDTMDNWDEEKLRKVILSKHG--NPKTTTDKVCKYFIEAVENGKYGWFWICPNGGDKCMYRHSLPEGFV 200          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROME (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila melanogaster GN=CG8635 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 100/207 (48.31%), Postives = 127/207 (61.35%), Query Frame = 2
Query:   62 KMPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQ-----PKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKET-MEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            K PP    K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ     P+ D  K                L  +FK   +Q KV  G DPKS++C F+K G C KG KCKFSHDL+ + K EK  IY D RD++  M +WD   L++VVE K+   +Q   TDI+CK+FLEAVEK +YGWFW CPNGGK   YRHAL  G V
Sbjct:    5 KAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQSGGQHPRQDGDKRKEEKEKKLAEQREMAL--IFKPVQTQ-KVEKGTDPKSVVCAFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKLKEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGGK-CIYRHALPAGYV 206          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_DROPS (Zinc finger CCCH domain-containing protein 15 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21225 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.994e-44
Identity = 95/209 (45.45%), Postives = 126/209 (60.29%), Query Frame = 2
Query:   65 MPPKQ-----QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKI--AVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKET--MEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+       K E  KK+K++EDKTFGLKNK  +K  QK++Q +++ VQ      +                L ++  I   V   KV  G DPKS++C F+K G C KG KCKFSHDL+++ K EK  +Y D RD E   M +WD   L++VV+ K+ E ++   T+I+CK+FLEAVEK +YGWFW CPNG K   YRHAL PG V
Sbjct:    1 MPPKKAPAGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQ-QKFIQQVQKQVQAGGHHPRQDGDKKKDEKEKKLADLREMASIFKPVQTQKVDKGTDPKSVVCAFFKQGLCTKGDKCKFSHDLSLENKVEKRSMYVDMRDNEDDLMTNWDDAKLKEVVDKKHSEEKRRPTTEIICKFFLEAVEKSKYGWFWECPNGEK-CIYRHALPPGYV 207          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEEL (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis elegans GN=F27D4.4 PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 5.216e-44
Identity = 96/207 (46.38%), Postives = 123/207 (59.42%), Query Frame = 2
Query:   65 MPPKQQS---KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKR----DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPKQQ    K+E  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+D R    D+ET E+WD + L +VV  KNK        DIVCKYFLEAVE  +YGWFW CPNGG+   YRH L  G V
Sbjct:    1 MPPKQQGPSKKSEQKRKEKVIEDKTFGLKNKKGNKN-QKFVAQVENQVRNNNTRMDLVRQQEAAKKKEKDELLDIANLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKDEETNENWDSDKLNEVVNKKNKNKHM---IDIVCKYFLEAVENNKYGWFWECPNGGEKCQYRHCLPEGYV 203          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: ZC3HF_CAEBR (Zinc finger CCCH domain-containing protein 15 homolog OS=Caenorhabditis briggsae GN=CBG00292 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.569e-40
Identity = 94/214 (43.93%), Postives = 120/214 (56.07%), Query Frame = 2
Query:   65 MPPKQ--QSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQ------------QNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPKQ    KAE  +K+K++EDKTFGLKNK  +KN QK+V  ++  V+    +  +               L+    +   + KV   VDPKS+LC F+K G C KG KCKFSHDL V +K  K ++Y+DK    T E+WD+E L++VV  KNK                 K  + VCKYFLEAVE  +YGWFW CPNGG    YRH L  G V
Sbjct:    1 MPPKQAPSKKAENKRKEKVIEDKTFGLKNKKGNKN-QKFVAQIENQVRNNNTRMDLVRQQEAAKKKEKDELLDIQNLLKPVEQKVAKDVDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADK----TNENWDKEKLDEVVNKKNKGGHVIDIVRDFLMIFALKNQEKVCKYFLEAVENNKYGWFWECPNGGDKCQYRHCLPEGYV 209          
BLAST of FC876581 vs. ExPASy Swiss-Prot
Match: MEP33_SCHPO (mRNA export protein 33 OS=Schizosaccharomyces pombe GN=mep33 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 66/211 (31.28%), Postives = 92/211 (43.60%), Query Frame = 2
Query:   65 MPPKQQSKAE-----LAKKQ--KIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQ-SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKP---TDIVCKYFLEAVEKKQYGWFWVCPNGGKDWHYRHALSPGNV 664
            MPPK+ +K +      AKK   K   D TFGLKNKN+S  VQ  ++ ++QN      + +K                     ++A     +P    P++ L    +                   ++ +KID+YSD RD++T        LEK            +P   TDIVCK+FLEA E  +YGW W CPNG     Y+HAL  G V
Sbjct:    1 MPPKKAAKGKGDPGKAAKKDPTKKAADATFGLKNKNRSTKVQAKIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAKAEVAALFNAIPKKQTPQNFLTRKEEV------------------KESQKIDLYSDVRDQQT-----DLPLEK------------RPWINTDIVCKFFLEACETGKYGWLWQCPNGNMTCIYKHALPYGYV 176          
The following BLAST results are available for this feature:
BLAST of FC876581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ZC3HF_DANRE1.016e-4747.09Zinc finger CCCH domain-containing protein 15 OS=D... [more]
TMA46_YEAST6.583e-4746.31Translation machinery-associated protein 46 OS=Sac... [more]
ZC3HF_DROME2.766e-4548.31Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_DROPS3.994e-4445.45Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEEL5.216e-4446.38Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CAEBR4.569e-4043.93Zinc finger CCCH domain-containing protein 15 homo... [more]
MEP33_SCHPO5.087e-1531.28mRNA export protein 33 OS=Schizosaccharomyces pomb... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DB04RM1 EHR Citrus clementina cDNA clone KN0AAN2DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876581 ID=FC876581; Name=FC876581; organism=Citrus clementina; type=EST; length=664bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAAGAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAGG
TTGTGGAATCAAAGAATAAGGAATACCAGCAGAACAAACCTACAGATATT
GTTTGTAAATACTTTTTAGAAGCTGTGGAGAAGAAACAGTATGGCTGGTT
TTGGGTCTGCCCAAATGGTGGTAAAGATTGGCATTACAGGCATGCTCTTT
CCCCTGGAAATGTT
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