FC876595

Overview
NameFC876595
Unique NameFC876595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 2.621e-51
Identity = 100/152 (65.79%), Postives = 118/152 (77.63%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RL  QDKNKYNTPKYR +VR +NKDI  QI  A I GD V+ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D  Y G  E TGE+++VEP D     FR  LDVGL +TTTG RVFGA+KGA++GGL+IPHS KRF G+
Sbjct:   32 ARKRLTFQDKNKYNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.423e-51
Identity = 99/152 (65.13%), Postives = 121/152 (79.61%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RLI QDKNKYNTPKYR VVRF+N+DI  Q+  + I GD +L AAYAHELP+YG++VGLTNYAAAYCTGLLLAR++L  L +D  Y G+ E TGE+++V+P  D    FR  LDVGL++TTTG RVFGA+KGA++GGL+I HS KRF GF
Sbjct:   32 ARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGF 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.423e-51
Identity = 98/152 (64.47%), Postives = 119/152 (78.29%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RLI QDKNKYNTPKYR +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG R+FGA+KGA++GGL+IPHS KRF G+
Sbjct:   32 ARKRLIFQDKNKYNTPKYRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 5.840e-51
Identity = 98/152 (64.47%), Postives = 119/152 (78.29%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RLI QDKNKYNTPK+R +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG RVFGA+KGA++GGL+IPHS KRF G+
Sbjct:   32 ARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 9.961e-51
Identity = 100/152 (65.79%), Postives = 121/152 (79.61%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTGNRVFGALKGA +GGL +PHS+KRF G+
Sbjct:   32 ARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.301e-50
Identity = 100/152 (65.79%), Postives = 121/152 (79.61%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTGNRVFGALKGA +GGL +PHS+KRF G+
Sbjct:   32 ARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.898e-50
Identity = 94/152 (61.84%), Postives = 119/152 (78.29%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD ++ AAY+HELPRYG++VGLTNYAAAY TGLLLARR+L+ L +D  Y G  + TG++Y+VEP D     FR  LDVGL +TTTG RVFGA+KGA++GGL++PHS KRF G+
Sbjct:   32 ARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.879e-49
Identity = 94/152 (61.84%), Postives = 118/152 (77.63%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RL  QDK+KYNTPKYR +VR +NKDI  QI  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     FR  LD GL++TTTG R+FGA+KGA++GGL+IPHS KRF G+
Sbjct:   32 ARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.204e-49
Identity = 100/155 (64.52%), Postives = 119/155 (76.77%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT----RRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RLI Q KNKYN PKYR VVRFTN+DII QIVS+ I GD V A+AY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D+ ++G  EA GE    E A+T    RRPF+A LDVGL +T+TG RVFGA+KGA +GG+ IPHS+ RF G+
Sbjct:   32 ARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGY 186          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 1.346e-47
Identity = 97/152 (63.82%), Postives = 116/152 (76.32%), Query Frame = 1
Query:   16 RIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA--DTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            R RL+ Q K KYNTPKYR VVRFTNKDII QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE Y +  A  D  RPF+  LD+GL +TTTG RVFGALKGA +GGL +PHS+ RF G+
Sbjct:   33 RKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGE-YELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGW 183          
The following BLAST results are available for this feature:
BLAST of FC876595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL5_DROME2.621e-5165.7960S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_HELAN3.423e-5165.1360S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_AEDAE3.423e-5164.4760S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5_ANOGA5.840e-5164.4760S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_THEPA9.961e-5165.7960S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN1.301e-5065.7960S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_BOMMO2.898e-5061.8460S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_LYSTE1.879e-4961.8460S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_NEUCR3.204e-4964.5260S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_YEAST1.346e-4763.8260S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC07RM1 EHR Citrus clementina cDNA clone KN0AAN2DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876595 ID=FC876595; Name=FC876595; organism=Citrus clementina; type=EST; length=465bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAAATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTT
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