FC876595

Overview
NameFC876595
Unique NameFC876595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:6..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.999e-47
Identity = 91/151 (60.26%), Postives = 118/151 (78.15%), Query Frame = 1
Query:   16 RIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            R RLI QDKNKYN+PKYR V R TN D+IAQ+V + IVGD VL AAYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++ D Y+G  +  G+ + V+P D + RPF+A LDVGL +T+TG +VF  LKGA++GG+ +PH + RFAG+
Sbjct:   33 RHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGY 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.116e-47
Identity = 92/152 (60.53%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED-YSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RL  QDKNKYNTPKYR VVR TNKDIIAQI  A + GD ++ +AYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G++ Y    A  +  FR  LD GL +T+TG R+FG LKG  + G+DIPHS KRF GF
Sbjct:   42 ARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGF 193          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.116e-47
Identity = 90/152 (59.21%), Postives = 119/152 (78.29%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RLI QDKNKYN PKYRFVVR TN  ++ Q++ A + GD ++ +A + EL RYG++VGLTNY+AAY TGLLLARR+LK   + DE++G  + +GE+Y +E  ++ RRPF+ +LDVG++ TT GNRVFGA+KGA +GGL IPHS+KRF GF
Sbjct:   32 ARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGF 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 8.452e-42
Identity = 89/152 (58.55%), Postives = 109/152 (71.71%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVFGA+KGA +GGL IPHS  RF GF
Sbjct:   32 ARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGF 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 8.452e-42
Identity = 89/152 (58.55%), Postives = 109/152 (71.71%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAGF 465
            AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVFGA+KGA +GGL IPHS  RF GF
Sbjct:   32 ARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGF 183          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 1.953e-30
Identity = 64/93 (68.82%), Postives = 73/93 (78.49%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE 291
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.224e-17
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450
            K R VVR TN+ II QI++A++ GD    AA + EL ++G E  L N  AAY TG+LLA R LK               G++             A+LD+GL + T G RVF ALKGA+  G DIPH+++
Sbjct:   32 KPRMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK--------------AGQE------------GAILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METB6 (50S ribosomal protein L18P OS=Methanoregula boonei (strain 6A8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.966e-16
Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447
            R VVR TN+ II Q+V+A + GD  L +A + EL +YG      N  AAY TGLL A +  K               G+D             A+LD+GL + T G RVF ALKGA++GGL+IP+ +
Sbjct:   34 RMVVRRTNRHIIVQLVTAEMEGDKTLVSANSAELEKYGYTGATANTPAAYLTGLLFAAKAKK--------------AGQD------------SAILDIGLNRATPGARVFAALKGAVDGGLEIPYGE 134          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 57/131 (43.51%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450
            K RFVVR TN+ I  Q++ A   GD  +AAA++ EL  +YG   G  N  AAY TGLL A R LK               G  Y+V            LD+GL + T G RVF ALKGAL+ GL+IPHS++
Sbjct:   32 KPRFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK--------------AGITYAV------------LDIGLHRPTRGARVFAALKGALDAGLEIPHSEE 136          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METMJ (50S ribosomal protein L18P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.027e-15
Identity = 50/127 (39.37%), Postives = 65/127 (51.18%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447
            R VVR TN+ II Q+V   + GDS L AAY+ EL  YG E    +  AAY TG+L A                V+A    Y            A+LD+GL +   G RVF ALKGA++ GLD+P+ +
Sbjct:   34 RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTGMLFA----------------VKALNAGYG----------EAILDIGLARAKPGARVFAALKGAVDAGLDVPYGE 134          
The following BLAST results are available for this feature:
BLAST of FC876595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL5_DICDI2.999e-4760.2660S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_OIKDI5.116e-4760.5360S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_EIMTE5.116e-4759.2160S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5B_SCHPO8.452e-4258.5560S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO8.452e-4258.5560S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_PIG1.953e-3068.8260S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_METHJ4.224e-1741.5450S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_METB67.966e-1640.1650S ribosomal protein L18P OS=Methanoregula boonei... [more]
RL18_HYPBU1.359e-1543.5150S ribosomal protein L18P OS=Hyperthermus butylic... [more]
RL18_METMJ3.027e-1539.3750S ribosomal protein L18P OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC07RM1 EHR Citrus clementina cDNA clone KN0AAN2DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876595 ID=FC876595; Name=FC876595; organism=Citrus clementina; type=EST; length=465bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAAATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTT
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