FC876595

Overview
NameFC876595
Unique NameFC876595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.807e-15
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447
            RAR +++        T K R VVR T   +IAQI++  + GD  L +A++ +L + G   G +N AAAY TG L  +R LK        EG  E                  A+LD+GL     G++VF ALKGA++ GL++PH +
Sbjct:   22 RARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE 134          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 49/130 (37.69%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450
            K R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF  L+GA+ GGL++PHSD+
Sbjct:   34 KPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDE 137          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.347e-14
Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450
            R VVR TN+ II Q++ A + GD  L  A + EL  YG +   +N  AAY TG+L A                V+A   D+   PA       A+LD+GL + T G +VF ALKGA+  GLD+PH ++
Sbjct:   34 RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14
Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHS 444
            K R VVR TN+ II Q +     GD V+A A++ EL +YG   G  N  AAY TG L A R  K         G  E                  A+LD+G   +T G+R++ ALKG L+ G+D+PHS
Sbjct:   32 KPRVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHS 133          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.272e-13
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAG 462
            R V R +  +I+AQIV  + VGD ++ +A++ E+ + G +    N  AAY TGLLL ++ LK        EGN E                  A+LD+GL   T G  V   LKGA++ G+DIPHS++   G
Sbjct:   34 RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPG 139          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447
            AR++L++ DK+       R VVR +N     Q++     GD  LA+A + +L  YG   G +N +A Y TG L A+R L              A G D             A+LD+GL     G++VF ALKGA++ GLDIP+ +
Sbjct:   23 ARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGE 134          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 53/140 (37.86%), Postives = 67/140 (47.86%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPH------SDKRFAG 462
            K R VVR TNK IIAQIV A  +GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF  LKGAL+ GL IPH      SD+R  G
Sbjct:   32 KPRLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDERIRG 145          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459
            K R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F  LKGAL+ G+DIPH D+  A
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459
            K R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F  LKGAL+ G+DIPH D+  A
Sbjct:   32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459
            K R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF   +GA++ GLD+PH+D   A
Sbjct:   32 KPRLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLA 138          
The following BLAST results are available for this feature:
BLAST of FC876595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL18_METTH8.807e-1535.6250S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_ARCFU1.962e-1437.6950S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_METPE3.347e-1439.0650S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_KORCO9.738e-1438.2850S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_META31.272e-1336.3650S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_METS32.833e-1334.4850S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_PYRAR4.833e-1337.8650S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_METM78.243e-1336.0950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM68.243e-1336.0950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_HALSA8.243e-1334.5950S ribosomal protein L18P OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC07RM1 EHR Citrus clementina cDNA clone KN0AAN2DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876595 ID=FC876595; Name=FC876595; organism=Citrus clementina; type=EST; length=465bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAAATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTT
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