FC876595
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.807e-15 Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 1 Query: 10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447 RAR +++ T K R VVR T +IAQI++ + GD L +A++ +L + G G +N AAAY TG L +R LK EG E A+LD+GL G++VF ALKGA++ GL++PH + Sbjct: 22 RARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK--------EGIEE------------------AVLDIGLRPAIRGSKVFAALKGAVDAGLNVPHGE 134
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14 Identity = 49/130 (37.69%), Postives = 69/130 (53.08%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450 K R VVR TN+ +IAQIV GD V+ + L +G + L N AAY TG+L+A++ L+ + GE A+LD+GL T G+RVF L+GA+ GGL++PHSD+ Sbjct: 34 KPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDE 137
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.347e-14 Identity = 50/128 (39.06%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450 R VVR TN+ II Q++ A + GD L A + EL YG + +N AAY TG+L A V+A D+ PA A+LD+GL + T G +VF ALKGA+ GLD+PH ++ Sbjct: 34 RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 9.738e-14 Identity = 49/128 (38.28%), Postives = 64/128 (50.00%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHS 444 K R VVR TN+ II Q + GD V+A A++ EL +YG G N AAY TG L A R K G E A+LD+G +T G+R++ ALKG L+ G+D+PHS Sbjct: 32 KPRVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHS 133
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.272e-13 Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFAG 462 R V R + +I+AQIV + VGD ++ +A++ E+ + G + N AAY TGLLL ++ LK EGN E A+LD+GL T G V LKGA++ G+DIPHS++ G Sbjct: 34 RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPG 139
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13 Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 1 Query: 13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447 AR++L++ DK+ R VVR +N Q++ GD LA+A + +L YG G +N +A Y TG L A+R L A G D A+LD+GL G++VF ALKGA++ GLDIP+ + Sbjct: 23 ARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGE 134
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13 Identity = 53/140 (37.86%), Postives = 67/140 (47.86%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPH------SDKRFAG 462 K R VVR TNK IIAQIV A +GD +A A L ++G N +AAY GL++ Y+ + E A+LD+GL + T G RVF LKGAL+ GL IPH SD+R G Sbjct: 32 KPRLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDERIRG 145
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13 Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459 K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F LKGAL+ G+DIPH D+ A Sbjct: 32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13 Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459 K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F LKGAL+ G+DIPH D+ A Sbjct: 32 KPRLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_HALSA (50S ribosomal protein L18P OS=Halobacterium salinarium GN=rpl18p PE=1 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13 Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459 K R V R +NK + AQ+V+ GD +A+A++ +L YG N AAY TGLL +R + D VE A+LD+GL T G++VF +GA++ GLD+PH+D A Sbjct: 32 KPRLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLA 138 The following BLAST results are available for this feature:
BLAST of FC876595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876595 ID=FC876595; Name=FC876595; organism=Citrus clementina; type=EST; length=465bpback to top |