FC876595

Overview
NameFC876595
Unique NameFC876595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:6..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_HALS3 (50S ribosomal protein L18P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 46/133 (34.59%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459
            K R V R +NK + AQ+V+    GD  +A+A++ +L  YG      N  AAY TGLL  +R +                  D  VE         A+LD+GL   T G++VF   +GA++ GLD+PH+D   A
Sbjct:   32 KPRLVARKSNKHVTAQLVTTGPDGDETVASAHSSDLDAYGWAAPTGNLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTATPGSKVFAIQEGAIDAGLDVPHNDSVLA 138          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_HALMA (50S ribosomal protein L18P OS=Haloarcula marismortui GN=rpl18p PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 47/129 (36.43%), Postives = 64/129 (49.61%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447
            K R V R +NK + AQ+V+    GD  LA+A++ +L  YG E    N  +AY TGLL   R           E  VE                  A+LD+GL   T G++VF   +GA++ GLDIPH+D
Sbjct:   32 KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRA---------QEAGVE-----------------EAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHND 134          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 49/130 (37.69%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450
            K R VVR TNK IIAQIV A   GD  +  A    L ++G      N AAAY  GL++  +                          A  RR   A+LD+GL +   G RVF  LKGAL+ GL IPH ++
Sbjct:   32 KPRLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPHGEE 135          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 48/133 (36.09%), Postives = 67/133 (50.38%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459
            K R V R +  ++ AQ++S +  GD VL +A+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F  LKGAL+ G+DIPH D+  A
Sbjct:   32 KPRLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA 138          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 50/128 (39.06%), Postives = 64/128 (50.00%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447
            R VVR TNK IIAQI   N  GD ++ AA++ EL  ++G +  L N  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F A+KGA++ GL IP  D
Sbjct:   34 RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGD 135          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRFA 459
            K R V R +  ++ AQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL  + +K                ED             A+LD GL + T G  +F  LKGAL+ G+DIPH DK  A
Sbjct:   32 KPRLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA 138          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_PYRIL (50S ribosomal protein L18P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 49/140 (35.00%), Postives = 65/140 (46.43%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPH------SDKRFAG 462
            K R VVR TNK IIAQ+V A   GD  +       L ++G +    N  AAY  GL++             Y+  +    E              A+LD+GL +   G+RVF  LKGAL+ GL+IPH      SD R +G
Sbjct:   32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGIDTRALAKFGWKGDENNTPAAYLLGLIVG------------YKARIRGVKE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEEIIPSDDRISG 145          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.114e-12
Identity = 43/132 (32.58%), Postives = 64/132 (48.48%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRF 456
            K R VVR  N +I  Q++ A + GD  L    + EL  YG +    N  AAY TGLL  +++L +                 Y+            +LD+GL   + G+RV+ ALKG ++ G+D+PHS + F
Sbjct:   32 KPRVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF 137          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.190e-11
Identity = 50/141 (35.46%), Postives = 67/141 (47.52%), Query Frame = 1
Query:   16 RIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIP 438
            R RLI   +N       R VVR TN+ II Q+++A + GD  L    + EL  +G +  L N  AAY TG+L A R  K       YEG +                      D+GL   +TG RVF A+KGA++ G D+P
Sbjct:   24 RQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGI---------------------ADIGLQVASTGARVFAAIKGAVDAGFDVP 131          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRF 456
            K R VVR T+  +IAQI+     GD VLAAA + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+ ALKGA++ GL++P S+  F
Sbjct:   32 KPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138          
The following BLAST results are available for this feature:
BLAST of FC876595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL18_HALS38.243e-1334.5950S ribosomal protein L18P OS=Halobacterium salina... [more]
RL18_HALMA8.243e-1336.4350S ribosomal protein L18P OS=Haloarcula marismort... [more]
RL18_PYRAE2.398e-1237.6950S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]
RL18_METM52.398e-1236.0950S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_SULTO6.979e-1239.0650S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_METMP6.979e-1235.3450S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_PYRIL9.114e-1235.0050S ribosomal protein L18P OS=Pyrobaculum islandic... [more]
RL18_METTP9.114e-1232.5850S ribosomal protein L18P OS=Methanosaeta thermop... [more]
RL18_METLZ1.190e-1135.4650S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_UNCMA2.030e-1136.8450S ribosomal protein L18P OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC07RM1 EHR Citrus clementina cDNA clone KN0AAN2DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876595 ID=FC876595; Name=FC876595; organism=Citrus clementina; type=EST; length=465bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAAATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTT
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