FC876595
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11 Identity = 45/130 (34.62%), Postives = 61/130 (46.92%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450 K R VVR TNK IIAQ+V A GD + L ++G N +AAY GL+ Y+ + E A+LD+GL + G+RVF LKGAL+ GL+IPH ++ Sbjct: 32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEE 135
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11 Identity = 43/130 (33.08%), Postives = 65/130 (50.00%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRF 456 R VVR + + + Q+V+ + GD L++A + EL +YG E N AAY TGLL + L + YE V LD+G+ ++ G+RV+ ALKG ++ GLD+PH+ F Sbjct: 34 RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVF 137
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11 Identity = 52/125 (41.60%), Postives = 63/125 (50.40%), Query Frame = 1 Query: 67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIP 438 RFVVR T K II QIV+A GD +AAA++ EL +YG GL N AAY TGLL A R LK G Y+V D+GL T G +VF A+K A + GL +P Sbjct: 34 RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVP 132
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11 Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450 K R VVRF+N+ ++AQ++ + GD +A A + EL ++G G N AAY GLL+ R L K +++ A+LDVGL + T G R+F +KGA++ GL++PH ++ Sbjct: 32 KPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEE 136
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11 Identity = 53/159 (33.33%), Postives = 76/159 (47.80%), Query Frame = 1 Query: 1 ARG-RARIRLINQDKNKYN---------TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447 ARG R R+ L + + K N + K R VVR ++ I QI A GD V+A+A+++EL +YG + N A Y G L A++ LK +G E A++D+GL + +RVF A+KGAL+ GL IP D Sbjct: 2 ARGARYRVPLKRRREGKTNYYKRRKLIISGKPRLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD 134 The following BLAST results are available for this feature:
BLAST of FC876595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876595 ID=FC876595; Name=FC876595; organism=Citrus clementina; type=EST; length=465bpback to top |