FC876595

Overview
NameFC876595
Unique NameFC876595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_THENV (50S ribosomal protein L18P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 45/130 (34.62%), Postives = 61/130 (46.92%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450
            K R VVR TNK IIAQ+V A   GD  +       L ++G      N +AAY  GL+              Y+  +    E              A+LD+GL +   G+RVF  LKGAL+ GL+IPH ++
Sbjct:   32 KPRLVVRKTNKHIIAQVVVAKPQGDVTIVGVDTRALAKFGWRGDENNTSAAYLLGLVAG------------YKARLRGVRE--------------AVLDIGLHRPVAGSRVFAVLKGALDAGLEIPHGEE 135          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.652e-11
Identity = 43/130 (33.08%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDKRF 456
            R VVR + + +  Q+V+ +  GD  L++A + EL +YG E    N  AAY TGLL   + L      + YE  V                     LD+G+  ++ G+RV+ ALKG ++ GLD+PH+   F
Sbjct:   34 RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVF 137          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_STAMF (50S ribosomal protein L18P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.523e-11
Identity = 52/125 (41.60%), Postives = 63/125 (50.40%), Query Frame = 1
Query:   67 RFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIP 438
            RFVVR T K II QIV+A   GD  +AAA++ EL  +YG   GL N  AAY TGLL A R LK               G  Y+V             D+GL   T G +VF A+K A + GL +P
Sbjct:   34 RFVVRKTLKHIIVQIVTAKPEGDITIAAAHSRELYKKYGWMGGLGNTPAAYLTGLLAALRGLK--------------AGIKYAVP------------DIGLHVPTRGAKVFAAIKAANDVGLKVP 132          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_CALMQ (50S ribosomal protein L18P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.908e-11
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVL-KMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSDK 450
            K R VVRF+N+ ++AQ++ +   GD  +A A + EL  ++G   G  N  AAY  GLL+  R L K +++                           A+LDVGL + T G R+F  +KGA++ GL++PH ++
Sbjct:   32 KPRLVVRFSNRYVLAQVIVSAPQGDFTVAEASSRELVKKFGWLGGTGNTPAAYLVGLLIGYRALSKGIKL---------------------------AVLDVGLHRVTKGGRLFAVVKGAVDAGLEVPHDEE 136          
BLAST of FC876595 vs. ExPASy Swiss-Prot
Match: RL18_THEPD (50S ribosomal protein L18P OS=Thermofilum pendens (strain Hrk 5) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.716e-11
Identity = 53/159 (33.33%), Postives = 76/159 (47.80%), Query Frame = 1
Query:    1 ARG-RARIRLINQDKNKYN---------TPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALNGGLDIPHSD 447
            ARG R R+ L  + + K N         + K R VVR  ++  I QI  A   GD V+A+A+++EL +YG +    N  A Y  G L A++ LK        +G  E                  A++D+GL +    +RVF A+KGAL+ GL IP  D
Sbjct:    2 ARGARYRVPLKRRREGKTNYYKRRKLIISGKPRLVVRVLSRTAIVQIAKATPKGDVVIASAHSNELKKYGWKGYRRNTPALYLLGFLAAKKALK--------QGVTE------------------AIVDIGLHRPVKASRVFAAVKGALDAGLKIPVGD 134          
The following BLAST results are available for this feature:
BLAST of FC876595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RL18_THENV2.652e-1134.6250S ribosomal protein L18P OS=Thermoproteus neutro... [more]
RL18_METBU2.652e-1133.0850S ribosomal protein L18P OS=Methanococcoides bur... [more]
RL18_STAMF4.523e-1141.6050S ribosomal protein L18P OS=Staphylothermus mari... [more]
RL18_CALMQ5.908e-1133.3350S ribosomal protein L18P OS=Caldivirga maquiling... [more]
RL18_THEPD7.716e-1133.3350S ribosomal protein L18P OS=Thermofilum pendens ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC07RM1 EHR Citrus clementina cDNA clone KN0AAN2DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876595 ID=FC876595; Name=FC876595; organism=Citrus clementina; type=EST; length=465bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAAATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTT
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