FC876597

Overview
NameFC876597
Unique NameFC876597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 5.106e-54
Identity = 106/182 (58.24%), Postives = 128/182 (70.33%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPH  KRF G+  + K+ +AEVHRK+I G +VA YM  LME
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_STYCL (60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 8.709e-54
Identity = 106/182 (58.24%), Postives = 126/182 (69.23%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VRFTNKDI+ QI  A I GD V+ AAYAHELPRYG++VGLTNYAAAYCTGLLL+RR+L    +D+ YEG  E  G+++ VE  D +   FRA LDVGL +TTTG +VF            IPH  KRF G+  +     AEVHR +IFGGHV+ YM  L E
Sbjct:   32 ARKRLVVQDKNKYNTPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHELPRYGVKVGLTNYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEE 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.709e-54
Identity = 107/182 (58.79%), Postives = 127/182 (69.78%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RLI QDKNKYNTPKYR +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG R+F            IPH  KRF G+S + K  +AEVHR +IFG HVA YM TL E
Sbjct:   32 ARKRLIFQDKNKYNTPKYRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTLEE 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.137e-53
Identity = 106/182 (58.24%), Postives = 128/182 (70.33%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAH+LP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPH  KRF G+  + K+ +AEVHRK+I G +VA YM  LME
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.486e-53
Identity = 106/182 (58.24%), Postives = 127/182 (69.78%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G++Y+VE  D +   F   LD GL +TTTGN+VF            IPH  KRF G+  + K+ +AEVHRK+I G +VA YM  LME
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.486e-53
Identity = 106/182 (58.24%), Postives = 127/182 (69.78%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPH  KRF G+  + K+  AEVHRK+I G +VA YM  L+E
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLIE 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.486e-53
Identity = 105/182 (57.69%), Postives = 126/182 (69.23%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTGN+VF            IPH  KRF G+  + K+ + EVHRK+IF  +VA YM  LME
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLME 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 1.940e-53
Identity = 104/182 (57.14%), Postives = 126/182 (69.23%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTGN+VF            IPH  KRF G+  + K+ + EVHRK+IF  ++A YM  LME
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLME 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.309e-53
Identity = 109/185 (58.92%), Postives = 130/185 (70.27%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT----RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RLI Q KNKYN PKYR VVRFTN+DII QIVS+ I GD V A+AY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D+ ++G  EA GE    E A+T    RRPF+A LDVGL +T+TG RVF            IPH + RF G+  + ++LDAE  +KYIFGGHVA YM TL +
Sbjct:   32 ARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMETLAD 216          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 4.322e-53
Identity = 106/182 (58.24%), Postives = 126/182 (69.23%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  D +   F   LD GL +TTTGN+VF            IPH  KRF G+  + K+ +AEVHRK+I G +VA YM  LME
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 213          
The following BLAST results are available for this feature:
BLAST of FC876597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_CHICK5.106e-5458.2460S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_STYCL8.709e-5458.2460S ribosomal protein L5 OS=Styela clava GN=RPL5 P... [more]
RL5_AEDAE8.709e-5458.7960S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5_MACFA1.137e-5358.2460S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_RAT1.486e-5358.2460S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5_BOVIN1.486e-5358.2460S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5A_XENLA1.486e-5357.6960S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5B_XENLA1.940e-5357.1460S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5_NEUCR3.309e-5358.9260S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_MOUSE4.322e-5358.2460S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC09RM1 EHR Citrus clementina cDNA clone KN0AAN2DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876597 ID=FC876597; Name=FC876597; organism=Citrus clementina; type=EST; length=555bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATANTGACAAG
AGGTTTGCTGGTTTTTCTAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTTTGGTGGACATGTTGCTGCTTACATGATTACATTGA
TGGAG
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