FC876597

Overview
NameFC876597
Unique NameFC876597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.102e-48
Identity = 100/182 (54.95%), Postives = 125/182 (68.68%), Query Frame = 1
Query:   16 RIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA--DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            R RL+ Q K KYNTPKYR VVRFTNKDII QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE Y +  A  D  RPF+  LD+GL +TTTG RVF            +PH + RF G+  + +++D E+ R YIFGGHV+ YM  L +
Sbjct:   33 RKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGE-YELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELAD 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.879e-48
Identity = 102/182 (56.04%), Postives = 122/182 (67.03%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED-YSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RL  QDKNKYNTPKYR VVR TNKDIIAQI  A + GD ++ +AYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G++ Y    A  +  FR  LD GL +T+TG R+F            IPH  KRF GF+ DGK L+AE H+ +IFGGHV  YM  L E
Sbjct:   42 ARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEE 221          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.297e-46
Identity = 98/186 (52.69%), Postives = 128/186 (68.82%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSK--DG--KQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RLI QDKNKYN PKYRFVVR TN  ++ Q++ A + GD ++ +A + EL RYG++VGLTNY+AAY TGLLLARR+LK   + DE++G  + +GE+Y +E  ++ RRPF+ +LDVG++ TT GNRVF            IPH +KRF GF+K  DG     + EVHR  I+G HVA YM TL E
Sbjct:   32 ARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKE 217          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.256e-44
Identity = 95/182 (52.20%), Postives = 119/182 (65.38%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPH   RF GF  + ++LD E  RKYI+GGHVA YM  L++
Sbjct:   32 ARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLID 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.256e-44
Identity = 95/182 (52.20%), Postives = 119/182 (65.38%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDKRFAGFSKDGKQLDAEVHRKYIFGGHVAAYMITLME 555
            AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPH   RF GF  + ++LD E  RKYI+GGHVA YM  L++
Sbjct:   32 ARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLID 213          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.014e-30
Identity = 64/93 (68.82%), Postives = 73/93 (78.49%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE 291
            AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:   32 ARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of FC876597 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.093e-11
Identity = 47/130 (36.15%), Postives = 63/130 (48.46%), Query Frame = 1
Query:   61 KYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHXDK 450
            K R VVR TN+ II QI++A++ GD    AA + EL ++G E  L N  AAY TG+LLA R LK               G++             A+LD+GL + T G RVF            IPH ++
Sbjct:   32 KPRMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK--------------AGQE------------GAILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
The following BLAST results are available for this feature:
BLAST of FC876597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_YEAST1.102e-4854.9560S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_OIKDI1.879e-4856.0460S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_EIMTE2.297e-4652.6960S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5B_SCHPO6.256e-4452.2060S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO6.256e-4452.2060S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_PIG3.014e-3068.8260S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_METHJ4.093e-1136.1550S ribosomal protein L18P OS=Methanospirillum hun... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2DC09RM1 EHR Citrus clementina cDNA clone KN0AAN2DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876597 ID=FC876597; Name=FC876597; organism=Citrus clementina; type=EST; length=555bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATANTGACAAG
AGGTTTGCTGGTTTTTCTAAGGATGGCAAGCAGCTGGATGCTGAGGTTCA
CCGCAAGTATATCTTTGGTGGACATGTTGCTGCTTACATGATTACATTGA
TGGAG
back to top