FC876599

Overview
NameFC876599
Unique NameFC876599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig922 contig Ccv1_Contig922:71..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876599 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 53/178 (29.78%), Postives = 90/178 (50.56%), Query Frame = 3
Query:   63 GLTASIALEQAG---PASGKKVLVTAAAGGTGQFAVQLAKLAG-NTVVATCGGEHKAQLL-KELGVDRVINYKAEDIKTVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIGMISQYQGEHGWQPSNYPGLCEKILAKSQTVAGFFLVQHSHLWQQPLNKLFQLFSAGKLKV 581
            GLT+ I +++ G     S + ++V+ AAG  G  A Q+ +L G + VV  CG   K   L  ELG D  INYK  ++     +  P G D+ +++VGGD+ +  +  +     +I+ G ISQY  +  + P   P +      ++ T   F ++ +   ++  + +L Q F  GKLK+
Sbjct:  137 GLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKEGNVAEQLHKLCPAGVDVYFDNVGGDISDTVISQMNQNSHIILCGQISQYNKDVPYPPPLPPAIEAIQKERNITRERFLVLNYKDKFEFGILQLSQWFKEGKLKI 314          
BLAST of FC876599 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 54/153 (35.29%), Postives = 74/153 (48.37%), Query Frame = 3
Query:   63 GLTASIALEQAG-PASGKKVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGEHKAQLLKE-LGVDRVINYKAEDIKTVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIGMISQYQG-EHGWQPSNYPGLCEKILAKSQTVAGFFLVQ 512
            G TA + L   G P  G+ ++V AA G  G    Q+ KL G  VV   GG  K +   E LG D  +++ A+D      +  PKG DI YE+VGG +F+  L  L    R+ V G++S Y   E    P   P L   +L K   + GF + Q
Sbjct:  134 GFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQ 286          
BLAST of FC876599 vs. ExPASy Swiss-Prot
Match: VAT1_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog OS=Mus musculus GN=Vat1 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 58/206 (28.16%), Postives = 89/206 (43.20%), Query Frame = 3
Query:   12 ILPVARPDPEVVAMLTSGLTASIALEQAGPAS-GKKVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGEHKAQLLKELGVDRVINYKAEDIKTVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIGMISQYQG---------EHGWQPSNYPGLCEKILAKSQTVAGF---FLVQHSHLWQQPLNKLFQLFSAGKLKVSLD 590
            ++P A    E  A+L + +TA + L   G    G  VLV  AAGG G  A+QL +   N  V       K ++LKE GV   I+Y   D     K+  PKG DI+ + +GG         L   G+++  GM +   G            W   +   L  ++L  ++ V GF   +L     L    + +L  L++ G +K  +D
Sbjct:  169 LMPEAMTFEEAAALLVNYITAYMVLFDFGNLRPGHSVLVHMAAGGVGMAALQLCRTVENVTVFGTASASKHEVLKENGVTHPIDYHTTDYVDEIKKISPKGVDIVMDPLGGSDTAKGYHLLKPMGKVVTYGMANLLTGPKRNLMAMARTWWNQFSVTAL--QLLQANRAVCGFHLGYLDGEVELVNSVVTRLVALYNQGHIKPRID 372          
BLAST of FC876599 vs. ExPASy Swiss-Prot
Match: VAT1_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 59/206 (28.64%), Postives = 88/206 (42.72%), Query Frame = 3
Query:   12 ILPVARPDPEVVAMLTSGLTASIALEQAGPAS-GKKVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGEHKAQLLKELGVDRVINYKAEDIKTVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIGMISQYQG---------EHGWQPSNYPGLCEKILAKSQTVAGF---FLVQHSHLWQQPLNKLFQLFSAGKLKVSLD 590
            ++P A    E  A+L + +TA + L   G    G  VLV  AAGG G  AVQL +   N  V       K + LKE GV   I+Y   D     K+  PKG DI+ + +GG         L   G+++  GM +   G            W   +   L  ++L  ++ V GF   +L     L    + +L  L++ G +K  +D
Sbjct:  156 LIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTASASKHEALKENGVTHPIDYHTTDYVDEIKKISPKGVDIVMDPLGGSDTAKGYNLLKPMGKVVTYGMANLLTGPKRNLMALARTWWNQFSVTAL--QLLQANRAVCGFHLGYLDGEVELVSGVVARLLALYNQGHIKPHID 359          
BLAST of FC876599 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 3
Query:   15 LPVARPDP----EVVAMLTSGLTASIALEQAG----PASGKK--VLVTAAAGGTGQFAVQLAKLAGNTVVATCGGEHKAQLLKELGVDRVINYKAEDIKTVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVI 398
            L V RP      E  A+  +GLTA  AL          +GKK  +LVTAA+GG G +AVQLAKLA   V ATCG  +  + +K LG D V++YK  +     K    K +D +     G  F++    L+  G++I I
Sbjct:  115 LTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARN-IEFVKSLGADEVLDYKTPE-GAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDI 250          
BLAST of FC876599 vs. ExPASy Swiss-Prot
Match: QORL2_BOVIN (Quinone oxidoreductase-like protein 2 OS=Bos taurus PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 3
Query:   39 EVVAMLTSGLTASIALE-QAGPASGKKVLVTAAAGGTGQFAVQLA-KLAGNTVVATCGGEHKAQLLKELGVDRVINYKAEDIK-TVFKEEFPKGFDIIYESVGGDMFNLCLKALAVYGRLIVIG 401
            E  A+  S  TA  ALE +A    G+ VLVTAAAG TG   + +A  +    V+A  G + K QL  + G    +NY    +K  V K     G +++ + VGGD+F   L++LA  GR++V+G
Sbjct:  139 EAAALPVSYGTAIFALEHRACTQPGETVLVTAAAGATGLAVIDVATNILQAKVIAAAGSDEKCQLAMQSGAQSSVNYSRGSLKEAVGKLVGSGGVNVVIDMVGGDIFLEALRSLAYEGRIVVVG 262          
The following BLAST results are available for this feature:
BLAST of FC876599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PTGR2_BOVIN4.588e-1529.78Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
YNCB_ECOLI7.826e-1535.29Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
VAT1_MOUSE8.099e-1228.16Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
VAT1_HUMAN8.099e-1228.64Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
QORH_ARATH1.381e-1137.68Putative quinone-oxidoreductase homolog, chloropla... [more]
QORL2_BOVIN4.019e-1137.10Quinone oxidoreductase-like protein 2 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DC11RM1 EHR Citrus clementina cDNA clone KN0AAN2DC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876599 ID=FC876599; Name=FC876599; organism=Citrus clementina; type=EST; length=630bp
GCACGAGGCACATTCTTCCTGTGGCAAGACCAGATCCAGAAGTTGTTGCC
ATGCTTACTTCAGGGCTTACAGCTTCAATTGCTCTGGAACAGGCAGGACC
GGCATCTGGAAAAAAGGTGCTTGTTACAGCTGCTGCTGGGGGGACTGGGC
AATTTGCAGTCCAGCTCGCAAAATTAGCAGGAAATACTGTGGTTGCTACT
TGTGGAGGTGAGCATAAGGCCCAGCTTTTGAAAGAACTGGGAGTTGATCG
AGTCATAAACTACAAAGCTGAAGACATTAAAACTGTGTTCAAGGAGGAGT
TTCCCAAAGGTTTTGACATCATTTATGAATCTGTTGGTGGTGACATGTTT
AATCTTTGCTTGAAGGCTTTGGCAGTTTATGGACGGCTTATCGTGATTGG
AATGATTTCCCAGTATCAAGGAGAACATGGATGGCAGCCATCGAATTACC
CTGGATTGTGTGAAAAGATTTTAGCAAAAAGCCAAACTGTGGCTGGCTTT
TTCTTGGTACAACACAGTCACCTGTGGCAGCAACCTCTGAACAAACTCTT
TCAACTGTTCTCTGCAGGAAAGCTCAAGGTATCCCTGGACCCGAGAAGGT
TTGTGGGTCTCGATGCTGTTGCAGATGCTG
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