FC876602

Overview
NameFC876602
Unique NameFC876602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17_SPOFR (40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.685e-37
Identity = 76/122 (62.30%), Postives = 102/122 (83.61%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 440
            MGRVRTKTVKK+++ +IE+YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T DML  L  ++I+GL   +P
Sbjct:    1 MGRVRTKTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 122          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17_ANOGA (40S ribosomal protein S17 OS=Anopheles gambiae GN=RpS17 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 75/114 (65.79%), Postives = 97/114 (85.09%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 416
            MGRVRTKT+KK+S+ +IE+YY+R+T+DF TNK+I+EEVAIIP+K LRNKIAGF THLMKR++   VRGIS+KLQEEERERR ++VPD SA++ D I+VD ET +ML  L  ++I
Sbjct:    1 MGRVRTKTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQVRGISIKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHLDFNNI 114          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17_DROME (40S ribosomal protein S17 OS=Drosophila melanogaster GN=RpS17 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.863e-36
Identity = 76/124 (61.29%), Postives = 99/124 (79.84%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQS 446
            MGRVRTKTVKK+++ +IE+YY+R+TLDFHTNK+I EEVAIIP+K LRNKIAG+ THLM R++   VRGIS+KLQEEERERR ++VP  SA++ D I+VD +T +ML  L   +I GL   +P +
Sbjct:    1 MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT 124          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17_NEUCR (40S ribosomal protein S17 OS=Neurospora crassa GN=rps-17 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36
Identity = 80/134 (59.70%), Postives = 101/134 (75.37%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAI------KTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMITP 458
            MGRVRTKTVKKS++ +IERYY ++TLDF TNK+I +E+AII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ SA+      ++ ++ VD ET D+L  LG   I   V V P +   P
Sbjct:    1 MGRVRTKTVKKSAKVIIERYYPKLTLDFETNKRICDEIAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSALDFTQNSESGQLDVDTETKDLLKHLGFDSIP--VNVIPVTQAQP 132          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17B_YEAST (40S ribosomal protein S17-B OS=Saccharomyces cerevisiae GN=RPS17B PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE----IKVDKETLDMLAALGMSDISGLVEVEPQ 443
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+  +VP+ SA+        + VD +T D++ +LG+     ++ V  Q
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQ 127          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17A_YEAST (40S ribosomal protein S17-A OS=Saccharomyces cerevisiae GN=RPS17A PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.829e-35
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE----IKVDKETLDMLAALGMSDISGLVEVEPQ 443
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKRIQKGPVRGIS KLQEEERER+  +VP+ SA+        + VD +T D++ +LG+     ++ V  Q
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQ 127          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17_DICDI (40S ribosomal protein S17 OS=Dictyostelium discoideum GN=rps17 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 69/106 (65.09%), Postives = 91/106 (85.85%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDML 392
            MGRVRTKT+K++S+ +IE++Y R+T DF TNK+  +++A IPSKRLRNKIAGF THLM+RI  GPVRGIS KLQEEERE+R ++VP ESAIKT+E+K+D++  +ML
Sbjct:    1 MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEML 106          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17_CAEEL (40S ribosomal protein S17 OS=Caenorhabditis elegans GN=rps-17 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 73/115 (63.48%), Postives = 93/115 (80.87%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE---IKVDKETLDMLAALGMS 410
            M RVRTKTVKK+SR +IE+YY+RMT DFH NK++ +EVAII SK LRNKIAG+ THLM+RI++GPVRGIS+KLQEEERERR +++P+ S +   +   IKVD +T DML A G +
Sbjct:    1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17_ENCCU (40S ribosomal protein S17 OS=Encephalitozoon cuniculi GN=RPS17 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALG 404
            MG VR K VK+++R + E+Y+ R+   F  N  ++++VA++ SK+L+N+IAG+ T L K+I KG    + +K  EEERER+ + +P ES +  D ++VD  T++M+   G
Sbjct:    1 MGCVRNKIVKRAARTIAEKYFQRLDSTFDHNLLVVQDVAVVQSKKLKNEIAGYLTSLYKKILKGTYNKVYIKSHEEERERKENVIPKESMLDVDCVEVDDVTMEMIKRYG 110          
BLAST of FC876602 vs. ExPASy Swiss-Prot
Match: RS17E_METJA (30S ribosomal protein S17e OS=Methanocaldococcus jannaschii GN=rps17e PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 3
Query:   75 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 260
            MGR+R   +K+++ ++I++Y    T DF TNK++LEEVA I +KRLRN+IAG+ TH M+++Q
Sbjct:    1 MGRIRQTLIKRTAMELIKKYRDLFTTDFETNKRVLEEVAQISTKRLRNRIAGYITHKMRQLQ 62          
The following BLAST results are available for this feature:
BLAST of FC876602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_SPOFR1.685e-3762.3040S ribosomal protein S17 OS=Spodoptera frugiperda... [more]
RS17_ANOGA1.427e-3665.7940S ribosomal protein S17 OS=Anopheles gambiae GN=... [more]
RS17_DROME1.863e-3661.2940S ribosomal protein S17 OS=Drosophila melanogast... [more]
RS17_NEUCR2.434e-3659.7040S ribosomal protein S17 OS=Neurospora crassa GN=... [more]
RS17B_YEAST7.829e-3557.4840S ribosomal protein S17-B OS=Saccharomyces cerev... [more]
RS17A_YEAST7.829e-3557.4840S ribosomal protein S17-A OS=Saccharomyces cerev... [more]
RS17_DICDI1.744e-3465.0940S ribosomal protein S17 OS=Dictyostelium discoid... [more]
RS17_CAEEL2.975e-3463.4840S ribosomal protein S17 OS=Caenorhabditis elegan... [more]
RS17_ENCCU4.611e-1940.0040S ribosomal protein S17 OS=Encephalitozoon cunic... [more]
RS17E_METJA5.459e-1250.0030S ribosomal protein S17e OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF02RM1 EHR Citrus clementina cDNA clone KN0AAN1AF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876602 ID=FC876602; Name=FC876602; organism=Citrus clementina; type=EST; length=678bp
GCACGAGGCTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACA
GCAGCAGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGACCGT
GAAGAAGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACAC
TGGACTTCCATACCAACAAGAAAATTTTGGAGGAGGTTGCTATCATCCCC
TCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGATGAA
GAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAG
AGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAAG
ACTGATGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTCT
TGGCATGTCCGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATGA
TTACTCCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAAT
TGAGGCTTTGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATTAATC
AGTACTTCTTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTTTACT
ATTTTAAGAAGGGTGTTTAGTTAAAACTTGAACTCTGGCATCATACTTTA
GTTGATTTAATGGACTTGTTTTGTCTTT
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