FC876603

Overview
NameFC876603
Unique NameFC876603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.514e-39
Identity = 77/96 (80.21%), Postives = 89/96 (92.71%), Query Frame = 2
Query:  245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
            K + L K+GI++KQPNSAI+KC RVQLIKNGKK+ AFVP+DGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   50 KGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 2
Query:  245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
            K + L K+G++AKQPNSAI+KC RVQLIKNGKK+ AFVP+DGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   50 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.373e-39
Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 2
Query:  245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
            K + L K+G++AKQPNSAI+KC +VQLIKNGKK+ AFVP+DGCLN+I+ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   50 KGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.405e-39
Identity = 77/96 (80.21%), Postives = 86/96 (89.58%), Query Frame = 2
Query:  245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
            K + L KIG++AKQPNSAI+KC RVQLIKNGKKI AFVP+DGCLNYIEENDEVL+AGFGR GHAVGDIPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:   48 KGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.754e-39
Identity = 74/96 (77.08%), Postives = 87/96 (90.62%), Query Frame = 2
Query:  245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
            K + L KIG++AKQPNSAI+KC RVQLIKNGKKI AFVP+DGCLN++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   48 KGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          

HSP 2 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
            MGK +G+ T RKLK HR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLE+   + K
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 72/96 (75.00%), Postives = 85/96 (88.54%), Query Frame = 2
Query:  245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
            K + + KIG++AKQPNSAI+KC RVQLIKNGKK+ AFVP DGCLN+++ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:   48 KGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 72/96 (75.00%), Postives = 86/96 (89.58%), Query Frame = 2
Query:  245 KALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 532
            K + L K+G++AKQPNSAI+KC RVQLIKNGKKI AFVP+DGCLN+ EENDEVL+AGFGRK HAVGDIPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:   48 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          

HSP 2 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWK-KPFAGSSHAKGIVLEENRYQGK 282
            MGK RG+ T RKL+ HR+ Q+W DK YKK+HLG   K  PF  +SHAKGIVLE+   + K
Sbjct:    1 MGKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAK 60          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 76/122 (62.30%), Postives = 87/122 (71.31%), Query Frame = 2
Query:  158 KDKGGLINHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523
            KD+    N      L    RN  +     K L   KIGI++KQPNSA++KC RV L KN KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALFK KKEK
Sbjct:   20 KDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          

HSP 2 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query:  106 MGKTRGMGTGRKLKRHRKRQRWADKSYKKSHLGKEWKKPFAGSSHAKGIVLEENRYQGK 282
            +GK RG+  GRKL RHRK QRWAD  + K  LG  W+ PF G+SHAKG+V E+   + K
Sbjct:    3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESK 61          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 66/92 (71.74%), Postives = 82/92 (89.13%), Query Frame = 2
Query:  251 LFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526
            + + ++GI+AKQPNSAI+KC RVQL KNGKKI AFVP+DGCLNYI+END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:   50 IVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.738e-30
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526
            P  KA+ L KIG++AKQPNSAI+K  R QLI  GKKI AFVP DG + YIE NDEV + GFG+KG +VGDIPG+RFKV KV  VSL A+F  KKEKP
Sbjct:   42 PQAKAIVLEKIGVEAKQPNSAIRKAVRCQLIATGKKITAFVPYDGSVTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          
The following BLAST results are available for this feature:
BLAST of FC876603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_CANGA1.514e-3980.2140S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_NEUCR1.977e-3979.1740S ribosomal protein S23 OS=Neurospora crassa GN=... [more]
RS23_ASPFU3.373e-3979.1740S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_CIOIN4.405e-3980.2140S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_CAEEL5.754e-3977.0840S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SCHPO4.123e-3775.0040S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS23_GILMI4.123e-3775.0040S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS12_TETTH3.859e-3562.3040S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI9.506e-3471.7440S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS23_ENCCU3.738e-3065.9840S ribosomal protein S23 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF05RM1 EHR Citrus clementina cDNA clone KN0AAN1AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876603 ID=FC876603; Name=FC876603; organism=Citrus clementina; type=EST; length=709bp
CAACAAGTGGAGCACCCGGGCGGCAGGAGGACTGCAGGAGGAGGATGCAA
CTCTCGGACACCAAAGTCGGTCGTGACAGTGAAAAATCCTCATCGTAACG
CCAGCATGGGAAAGACACGTGGAATGGGAACGGGTCGCAAACTGAAAAGA
CACCGCAAAAGACAAAGGTGGGCTGATAAATCATACAAGAAATCCCACCT
TGGCAAAGAATGGAAGAAACCATTTGCTGGCTCTTCCCATGCAAAAGGCA
TTGTTCTTGAGGAAAATCGGTATCAAGGCAAAGCAGCCCAACTCCGCTAT
CAAAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGATTGCAG
CTTTCGTACCAGACGATGGTTGTTTGAACTACATTGAAGAAAATGACGAG
GTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGATATTCC
TGGTGTTAGATTTAAGGTTGTCAAGGTTTCAGGCGTGTCTCTTCTGGCCC
TCTTCAAGGAGAAGAAGGAGAAACCAAGATCCTAAACTCCTGATTCAAGA
TACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAATCCCCGT
TGATTACTGTTTTCCTTTATCATGTACTGCTGTTGAGAGAACTTTTTGGT
TTTTTTCCCTCTGTTGAGACTATTAGTAAATTAGTATCTGTCTCTTCTAA
AAAAAAAAA
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