FC876603

Overview
NameFC876603
Unique NameFC876603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526
            P  + + L K+GI+AKQPNSAI+KC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +   EKP
Sbjct:   43 PQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526
            P  + + L K+GI+AKQPNSAI+KC RVQLIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L +   EKP
Sbjct:   43 PQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 55/99 (55.56%), Postives = 79/99 (79.80%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            PM + + L K+G++A+QPNSA++KC RVQLIKNG+ + AFVP DG L  ++E+DEVLI G  G +G ++GDIPGVR++VV V+GVSL A+ + +K+KP+
Sbjct:   48 PMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526
            P  K + L K+G++AKQPNSAI+KC R+QLIKNG++I AF P DG +N+I+E+DEV I G  GR G + GDIPGVRF+V KV+ VSL  +   K++KP
Sbjct:   43 PQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 2
Query:  176 INHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            I + R     K   + L   P  + + L KI ++AKQPNS ++K  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 2
Query:  176 INHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            I + R     K   + L   P  + + L KI ++AKQPNS ++K  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526
            P  + + + K+GI+AKQPNSAI+KC RVQLIKNGK+I AF P DG + +I+E+DEV++ G  G  G ++GDIPGVR+KV KV+ VSL  + K K EKP
Sbjct:   42 PQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVKGKIEKP 139          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  224 LLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            L   P  + + L K+G++AKQPNSAI+KC R+QLIKNG++  AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  +   +KEKPR
Sbjct:   39 LSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 2
Query:  146 KDTAKDKGGLINHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526
            KD    +     + R     K   + L   P  + + L K+GI+AKQPNSAI+KC RVQLIKNG+++ AF P DG +++I+E+DEV IAG  G KG A+GD+  V +KV KV+GVSL+ L +   EKP
Sbjct:   13 KDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            P  + + L K+G++AKQPNSAI+KC RVQLIKNG+++ AF P DG +N+I+E+DEV +    GR G A+GDIPGVRFKV+ V+ VSL  L   + EKPR
Sbjct:   43 PQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141          
The following BLAST results are available for this feature:
BLAST of FC876603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_HALWD2.507e-2658.1630S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_HALSA2.507e-2658.1630S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_HYPBU3.275e-2655.5630S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_UNCMA7.295e-2657.1430S ribosomal protein S12P OS=Uncultured methanoge... [more]
RS12_PYRFU7.295e-2650.4230S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]
RS12_PYRAB7.295e-2650.4230S ribosomal protein S12P OS=Pyrococcus abyssi GN... [more]
RS12_METTH7.295e-2657.1430S ribosomal protein S12P OS=Methanobacterium the... [more]
RS12_METBU1.244e-2554.3730S ribosomal protein S12P OS=Methanococcoides bur... [more]
RS12_HALMO1.625e-2546.8830S ribosomal protein S12P OS=Halococcus morrhuae ... [more]
RS12_METAC2.123e-2556.5730S ribosomal protein S12P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF05RM1 EHR Citrus clementina cDNA clone KN0AAN1AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876603 ID=FC876603; Name=FC876603; organism=Citrus clementina; type=EST; length=709bp
CAACAAGTGGAGCACCCGGGCGGCAGGAGGACTGCAGGAGGAGGATGCAA
CTCTCGGACACCAAAGTCGGTCGTGACAGTGAAAAATCCTCATCGTAACG
CCAGCATGGGAAAGACACGTGGAATGGGAACGGGTCGCAAACTGAAAAGA
CACCGCAAAAGACAAAGGTGGGCTGATAAATCATACAAGAAATCCCACCT
TGGCAAAGAATGGAAGAAACCATTTGCTGGCTCTTCCCATGCAAAAGGCA
TTGTTCTTGAGGAAAATCGGTATCAAGGCAAAGCAGCCCAACTCCGCTAT
CAAAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGATTGCAG
CTTTCGTACCAGACGATGGTTGTTTGAACTACATTGAAGAAAATGACGAG
GTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGATATTCC
TGGTGTTAGATTTAAGGTTGTCAAGGTTTCAGGCGTGTCTCTTCTGGCCC
TCTTCAAGGAGAAGAAGGAGAAACCAAGATCCTAAACTCCTGATTCAAGA
TACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAATCCCCGT
TGATTACTGTTTTCCTTTATCATGTACTGCTGTTGAGAGAACTTTTTGGT
TTTTTTCCCTCTGTTGAGACTATTAGTAAATTAGTATCTGTCTCTTCTAA
AAAAAAAAA
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