FC876603
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26 Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526 P + + L K+GI+AKQPNSAI+KC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 43 PQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26 Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526 P + + L K+GI+AKQPNSAI+KC RVQLIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L + EKP Sbjct: 43 PQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26 Identity = 55/99 (55.56%), Postives = 79/99 (79.80%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 PM + + L K+G++A+QPNSA++KC RVQLIKNG+ + AFVP DG L ++E+DEVLI G G +G ++GDIPGVR++VV V+GVSL A+ + +K+KP+ Sbjct: 48 PMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26 Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526 P K + L K+G++AKQPNSAI+KC R+QLIKNG++I AF P DG +N+I+E+DEV I G GR G + GDIPGVRF+V KV+ VSL + K++KP Sbjct: 43 PQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26 Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 2 Query: 176 INHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 I + R K + L P + + L KI ++AKQPNS ++K RVQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26 Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 2 Query: 176 INHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 I + R K + L P + + L KI ++AKQPNS ++K RVQLIKNGK + AF P DG + +I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 28 IRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METTH (30S ribosomal protein S12P OS=Methanobacterium thermoautotrophicum GN=rps12p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26 Identity = 56/98 (57.14%), Postives = 74/98 (75.51%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526 P + + + K+GI+AKQPNSAI+KC RVQLIKNGK+I AF P DG + +I+E+DEV++ G G G ++GDIPGVR+KV KV+ VSL + K K EKP Sbjct: 42 PQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQITAFAPGDGAIGFIDEHDEVVVEGIGGPSGRSMGDIPGVRWKVTKVNNVSLQEMVKGKIEKP 139
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METBU (30S ribosomal protein S12P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps12p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.244e-25 Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 2 Query: 224 LLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 L P + + L K+G++AKQPNSAI+KC R+QLIKNG++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL + +KEKPR Sbjct: 39 LSGAPQGRGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQATAFCPGDGAINFIDEHDEVTVERIGGRMGGAMGDIPGVRFKVIAVNNVSLREMVIGRKEKPR 141
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_HALMO (30S ribosomal protein S12P OS=Halococcus morrhuae GN=rps12p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25 Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 2 Query: 146 KDTAKDKGGLINHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 526 KD + + R K + L P + + L K+GI+AKQPNSAI+KC RVQLIKNG+++ AF P DG +++I+E+DEV IAG G KG A+GD+ V +KV KV+GVSL+ L + EKP Sbjct: 13 KDRQNHRWSDSKYARRARGLKEKTDALEGAPQGRGIVLEKVGIEAKQPNSAIRKCVRVQLIKNGQQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSAVNYKVEKVNGVSLIELVRGNAEKP 140
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METAC (30S ribosomal protein S12P OS=Methanosarcina acetivorans GN=rps12p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25 Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 P + + L K+G++AKQPNSAI+KC RVQLIKNG+++ AF P DG +N+I+E+DEV + GR G A+GDIPGVRFKV+ V+ VSL L + EKPR Sbjct: 43 PQGRGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFCPGDGAVNFIDEHDEVTVEKIGGRMGGAMGDIPGVRFKVIAVNNVSLNQLVIGRMEKPR 141 The following BLAST results are available for this feature:
BLAST of FC876603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876603 ID=FC876603; Name=FC876603; organism=Citrus clementina; type=EST; length=709bpback to top |