FC876603
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24 Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 2 Query: 146 KDTAKDKGGLINHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 +D+ K + N+ R + L P + + L K+G++AKQPNSAI+KC RVQLIKNG+++ AF DG +N+I+E+DEV I G GR G ++GDIPGVR+ V V+ V L + +KEKPR Sbjct: 13 RDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22 Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523 PM + + + K+G++AKQPNSAI+KC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 48 PMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22 Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523 PM + + + K+G++AKQPNSAI+KC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 48 PMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22 Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523 PM + + + K+G++AKQPNSAI+KC RVQLIKNG+++ AF P + +N+I+E+DEV+I G G G A GDIPGVR+KVV V S+ L + ++EK Sbjct: 48 PMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22 Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 2 Query: 179 NHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523 N+ R K + L PM + + + K+G++AKQPNSAI+KC RVQLIKNG+ + AF P + +N+I+E+DEV+I G G + A GDIPGV++KV+ V SL L + ++EK Sbjct: 29 NYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22 Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 PM + + + K+G++AKQPNSAI+KC +VQLIKNG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVRF+VV V S+ L + ++EK R Sbjct: 48 PMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21 Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 2 Query: 236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523 PM + + + K+G++AKQPNSAI+KC +VQLIKNG+ + AF P + +N+I+E+DEV+I G G G A GDIPGVR+KV+ V S+ L + ++EK Sbjct: 48 PMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19 Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = 2 Query: 182 HTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529 + R K + L PM + L K ++ +QPNS K RVQL KNGK + AF P DG + I+E+DEVLI G GR+G ++GDIPGVR+KV V+G L L K K EK R Sbjct: 26 YVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142 The following BLAST results are available for this feature:
BLAST of FC876603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876603 ID=FC876603; Name=FC876603; organism=Citrus clementina; type=EST; length=709bpback to top |