FC876603

Overview
NameFC876603
Unique NameFC876603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METB6 (30S ribosomal protein S12P OS=Methanoregula boonei (strain 6A8) GN=rps12p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.228e-24
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 2
Query:  146 KDTAKDKGGLINHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            +D+ K +    N+ R         + L   P  + + L K+G++AKQPNSAI+KC RVQLIKNG+++ AF   DG +N+I+E+DEV I G  GR G ++GDIPGVR+ V  V+ V L  +   +KEKPR
Sbjct:   13 RDSKKFRWSDKNYARRELNLDVKSDPLEGAPQARGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGRQVTAFAVGDGAINFIDEHDEVEIEGIGGRLGRSMGDIPGVRYVVTSVNNVCLHEMVIGRKEKPR 141          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METMP (30S ribosomal protein S12P OS=Methanococcus maripaludis GN=rps12p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523
            PM + + + K+G++AKQPNSAI+KC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:   48 PMGRGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVLVGKNSIRELVRGRQEK 144          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METM7 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps12p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523
            PM + + + K+G++AKQPNSAI+KC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:   48 PMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METM5 (30S ribosomal protein S12P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps12p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.288e-22
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523
            PM + + + K+G++AKQPNSAI+KC RVQLIKNG+++ AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KVV V   S+  L + ++EK
Sbjct:   48 PMGRGIVVEKVGLEAKQPNSAIRKCVRVQLIKNGRQVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVVMVGKNSIRELVRGRQEK 144          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METJA (30S ribosomal protein S12P OS=Methanocaldococcus jannaschii GN=rps12p PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 2
Query:  179 NHTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGFG--RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523
            N+ R     K   + L   PM + + + K+G++AKQPNSAI+KC RVQLIKNG+ + AF P +  +N+I+E+DEV+I G G  +   A GDIPGV++KV+ V   SL  L + ++EK
Sbjct:   29 NYVRRVLKLKEKYDPLEGAPMARGIVIEKVGLEAKQPNSAIRKCVRVQLIKNGRVVTAFCPGNHAINFIDEHDEVIIEGIGGPKGPRAKGDIPGVKYKVIMVGRNSLRELVRGRQEK 145          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_META3 (30S ribosomal protein S12P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps12p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            PM + + + K+G++AKQPNSAI+KC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVRF+VV V   S+  L + ++EK R
Sbjct:   48 PMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRFRVVMVGKNSMRELVRGRQEKVR 146          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_METVS (30S ribosomal protein S12P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps12p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 2
Query:  236 PMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 523
            PM + + + K+G++AKQPNSAI+KC +VQLIKNG+ + AF P +  +N+I+E+DEV+I G  G  G A GDIPGVR+KV+ V   S+  L + ++EK
Sbjct:   48 PMGRGIVVEKVGLEAKQPNSAIRKCVKVQLIKNGRVVTAFAPGNHAINFIDEHDEVVIEGIGGPSGQAKGDIPGVRYKVLMVGKNSIRELVRGRQEK 144          
BLAST of FC876603 vs. ExPASy Swiss-Prot
Match: RS12_NANEQ (30S ribosomal protein S12P OS=Nanoarchaeum equitans GN=rps12p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 54/117 (46.15%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  182 HTRNPTLAKNGRNHLLALPMQKALFLRKIGIKAKQPNSAIKKCARVQLIKNGKKIAAFVPDDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 529
            + R     K   + L   PM   + L K  ++ +QPNS   K  RVQL KNGK + AF P DG +  I+E+DEVLI G  GR+G ++GDIPGVR+KV  V+G  L  L K K EK R
Sbjct:   26 YVRRMLRIKEKYDPLEGAPMASGIVLEKTDVERRQPNSGRIKVVRVQLKKNGKVVTAFTPGDGAIKVIDEHDEVLIVGIRGRQGRSMGDIPGVRYKVYLVNGQPLELLRKGKIEKAR 142          
The following BLAST results are available for this feature:
BLAST of FC876603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_METB65.228e-2444.9630S ribosomal protein S12P OS=Methanoregula boonei... [more]
RS12_METMP1.288e-2252.5830S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METM71.288e-2252.5830S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METM51.288e-2252.5830S ribosomal protein S12P OS=Methanococcus maripa... [more]
RS12_METJA2.869e-2245.3030S ribosomal protein S12P OS=Methanocaldococcus j... [more]
RS12_META32.869e-2251.5230S ribosomal protein S12P OS=Methanococcus aeolic... [more]
RS12_METVS1.424e-2150.5230S ribosomal protein S12P OS=Methanococcus vannie... [more]
RS12_NANEQ2.969e-1946.1530S ribosomal protein S12P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF05RM1 EHR Citrus clementina cDNA clone KN0AAN1AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876603 ID=FC876603; Name=FC876603; organism=Citrus clementina; type=EST; length=709bp
CAACAAGTGGAGCACCCGGGCGGCAGGAGGACTGCAGGAGGAGGATGCAA
CTCTCGGACACCAAAGTCGGTCGTGACAGTGAAAAATCCTCATCGTAACG
CCAGCATGGGAAAGACACGTGGAATGGGAACGGGTCGCAAACTGAAAAGA
CACCGCAAAAGACAAAGGTGGGCTGATAAATCATACAAGAAATCCCACCT
TGGCAAAGAATGGAAGAAACCATTTGCTGGCTCTTCCCATGCAAAAGGCA
TTGTTCTTGAGGAAAATCGGTATCAAGGCAAAGCAGCCCAACTCCGCTAT
CAAAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGATTGCAG
CTTTCGTACCAGACGATGGTTGTTTGAACTACATTGAAGAAAATGACGAG
GTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGATATTCC
TGGTGTTAGATTTAAGGTTGTCAAGGTTTCAGGCGTGTCTCTTCTGGCCC
TCTTCAAGGAGAAGAAGGAGAAACCAAGATCCTAAACTCCTGATTCAAGA
TACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAATCCCCGT
TGATTACTGTTTTCCTTTATCATGTACTGCTGTTGAGAGAACTTTTTGGT
TTTTTTCCCTCTGTTGAGACTATTAGTAAATTAGTATCTGTCTCTTCTAA
AAAAAAAAA
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