FC876620

Overview
NameFC876620
Unique NameFC876620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15135 contig Ccv1_Contig15135:102..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.037e-31
Identity = 70/188 (37.23%), Postives = 117/188 (62.23%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKF-TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHN 631
            S++Y+ VARGTV+LAE +  + N ++IA Q L+K+P   +   +Y+ D + F+    +G T   +A E AGR+IP +FLE + + F + YG     +A A ++N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+N+LDRGE++ELLVDKT N+      FR+Q  +    +W  N
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRN 187          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.629e-30
Identity = 69/188 (36.70%), Postives = 112/188 (59.57%), Query Frame = 2
Query:   74 LIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI-ENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHNM 634
            +IYS VARG+ +LAE+T   GNF +I  + L  +P  + K +Y  + + F+YLV +  TY  +A E  GR+IP  FL+ VK  F   Y G K  TA+A  +N +F   L+  M +   +   +  +++  A++ EVK +++ +I   +L RGEKIE+LV++TD L  Q+  F++Q  +++  MW  N+
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNV 188          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.198e-28
Identity = 63/188 (33.51%), Postives = 110/188 (58.51%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHNM 634
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT+NL   +  F+     +   M + N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.198e-28
Identity = 64/188 (34.04%), Postives = 111/188 (59.04%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHNM 634
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R    +FL  VK+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT+NL   +  F+     +   M + N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI 187          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.198e-28
Identity = 67/190 (35.26%), Postives = 109/190 (57.37%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHNM 634
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKT+NL   +  F+     +   M + N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 63/188 (33.51%), Postives = 110/188 (58.51%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHNM 634
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT+NL   +  F+     +   M + N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 63/188 (33.51%), Postives = 110/188 (58.51%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHNM 634
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT+NL   +  F+     +   M + N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.554e-27
Identity = 63/188 (33.51%), Postives = 109/188 (57.98%), Query Frame = 2
Query:   71 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHNM 634
            +++++ VARGT ILA++    GNF  +  Q L K+P+ NNK TY    + F+Y+ ++   Y  +  +   R     FL  +K+ F   Y G +A TA+  ++N EF S L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKT+NL   +  F+     +   M + N+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876620 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 62/191 (32.46%), Postives = 103/191 (53.93%), Query Frame = 2
Query:   59 MGQQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIENVLDRGEKIELLVDKTDNLPSQAQHFRQQGTKMRTNMWIHN 631
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P T+ K  Y  + H F+Y+ EN   +  +  E  G QIP  FL  +++ F + YG   +  +   + +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IE  + RGEKIE++VDKT+ L S++  F+     ++  +W  N
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
The following BLAST results are available for this feature:
BLAST of FC876620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA712_ARATH9.037e-3137.23Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAM7B_DICDI2.629e-3036.70Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_RAT4.198e-2833.51Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_MOUSE4.198e-2834.04Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK4.198e-2835.26Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_HUMAN1.595e-2733.51Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN1.595e-2733.51Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB3.554e-2733.51Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI4.066e-2332.46Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AG04RM1 EHR Citrus clementina cDNA clone KN0AAN1AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876620 ID=FC876620; Name=FC876620; organism=Citrus clementina; type=EST; length=680bp
CAAATCTAGCATTTCTTTAGTTTCCCTCTCTCCGATCCCACGGGTTAGGG
TTTTGAGGATGGGCCAACAGTCGTTGATCTATAGCTTCGTGGCTCGAGGC
ACGGTGATCCTCGCCGAGTACACTGAGTTCACCGGTAATTTCACGAGCAT
CGCATCGCAATGTCTCCAGAAACTTCCCGCTACCAATAACAAGTTCACCT
ACAACTGCGATGGCCACACCTTCAATTACCTCGTTGAGAACGGCTTCACC
TATTGTGTGGTTGCTGTTGAATCTGCTGGCAGGCAAATTCCAATTGCCTT
TCTGGAGCGAGTTAAGGAGGATTTCAACAAGAGATATGGTGGAGGAAAAG
CTGCAACGGCTGTTGCAAATAGCCTGAACAAGGAGTTTGGGTCTAAACTA
AAGGAGCACATGCAGTATTGTGTGGATCATCCTGAAGAGATCAGCAAGCT
TGCCAAAGTCAAAGCTCAGGTCTCTGAAGTCAAGGGGGTTATGATGGAAA
ATATTGAGAACGTTCTTGATCGTGGTGAGAAGATTGAGCTGCTGGTTGAC
AAAACTGACAACCTTCCGTCACAGGCACAACATTTCCGACAACAGGGGAC
CAAGATGAGAACGAACATGTGGATCCACAATATGAATATTAAATTGATCC
TTTTGGGTATCATCATCGCATTGATCCTTA
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