FC876655

Overview
NameFC876655
Unique NameFC876655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length768
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876655_ssr414 microsatellite FC876655_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5022 contig Ccv1_Contig5022:844..1611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y2835_ORYSJ (B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.525e-35
Identity = 72/99 (72.73%), Postives = 80/99 (80.81%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGD---RQLYIDWKAR 297
            SDVGKLNRLVIPKQ+AEK+FPL + +  KGLLLNFED  GK WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD VSF R  G +    +L+IDWK R
Sbjct:  103 SDVGKLNRLVIPKQYAEKYFPLDAAANEKGLLLNFEDRAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSRGIGDEAARHRLFIDWKRR 201          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.525e-35
Identity = 81/139 (58.27%), Postives = 96/139 (69.06%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQ---------SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRST-GGDRQLYIDWKARTG------------PVENPVEPVQMMRLFGVNI 360
            SDVGKLNRLV+PKQHAEKHFPL+         + +T KG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFV+EK L+AGD + F RS  G D+ L+ID K                P  +  EP +++RLFGV+I
Sbjct:  189 SDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDKLLFIDCKKNNAAAATTTCAGDERPTTSGAEP-RVVRLFGVDI 326          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: NGA2_ARATH (B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.601e-35
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKAR 297
            SDVGKLNRLVIPKQHAE++FPL + +T+   KGLLLNFED +G  WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDIVSF R +    +LYIDW+ R
Sbjct:   30 SDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSCNKDKLYIDWRRR 128          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y2641_ORYSJ (B3 domain-containing protein Os02g0764100 OS=Oryza sativa subsp. japonica GN=Os02g0764100 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.756e-34
Identity = 79/127 (62.20%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQ-SGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRST-GGDRQLYIDWK-----ARTGPVENPV---EPVQMMRLFGVNI 360
            SDVGKLNRL++PKQHAEKHFPL+ + S + G+LLNFED  GKVWRFRYS WNSSQSYVLTKGWSRFV+EK L+AGD + F  S  G D+ L+ID K     A TG  E P+   E  +++RLFG++I
Sbjct:   24 SDVGKLNRLLVPKQHAEKHFPLRRTSSDASGVLLNFEDGEGKVWRFRYSCWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSGSAYGPDKLLFIDCKKNNTAAATGD-EKPITSGEATRVVRLFGMDI 149          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y5625_ARATH (B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.083e-33
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQS----------GSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKAR 297
            SDVGKLNRLVIPKQHAEK+FPL +           S+ KG+LL+FED +GK WRFRYSYWNSSQSYVLTKGWSRFVK+K L  GD+V F R     R+L+I W+ R
Sbjct:   53 SDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRRR 158          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y2608_ARATH (B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.578e-32
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTS---KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKAR 297
            SDVGKLNRLVIPKQHAE++FPL + +     KGLLL FED  GK WRFRYSYWNSSQSYVLTKGWSR+VKEK+L AGD+V FHR      + +I W+ R
Sbjct:   45 SDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRRR 143          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y3158_ARATH (B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.832e-32
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGS-----------TSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPV 330
            SDVGKLNRLVIPKQHAEK+FPL + +           T KG+LL+FED +GK W+FRYSYWNSSQSYVLTKGWSR+VK+K+L AGD+V F R      +L+I W+ R     +P   V
Sbjct:   36 SDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRRRGEASSSPAVSV 153          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.023e-31
Identity = 74/127 (58.27%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPL-----QSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRST---GGDRQLYIDWK--ARTGPVENPVEPVQMMRLFGVNI 360
            SDVGKLNRLV+PKQ AE+HFP       S +  KG+LLNFED  GKVWRFRYSYWNSSQSYVLTKGWSRFV+EK L+ GD V+F RS    G ++ L ID K   R        +   +++LFGV+I
Sbjct:  185 SDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGTEKHLLIDCKKMERNNLATVDDDARVVVKLFGVDI 311          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y1071_ORYSJ (Putative B3 domain-containing protein Os10g0537100 OS=Oryza sativa subsp. japonica GN=Os10g0537100 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.887e-31
Identity = 70/111 (63.06%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQS-------------GSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTG--GDRQLYIDWKAR 297
            SDVGKLNRLVIPKQHAE++FPL +             G   KGL+L+FED TGK WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD VSF R  G     +L+ID++ R
Sbjct:   42 SDVGKLNRLVIPKQHAERYFPLDAAAGAGGGGGGGGGGGGGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGLGDAARGRLFIDFRRR 152          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y1160_ORYSJ (B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica GN=Os11g0156000 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.290e-30
Identity = 70/113 (61.95%), Postives = 81/113 (71.68%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTS-KGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTG----GDRQLYIDWKAR--TGPVENPVEP 327
            SDVGKLNRLVIPKQHAE++FPL +G  + KGL+L+FED  G  WRFRYSYW SSQSYVLTKGWSR+VKEK L AGD+V F R  G    GDR L+I  + R      + P  P
Sbjct:   45 SDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDR-LFIGCRRRGDAAAAQTPAPP 156          
The following BLAST results are available for this feature:
BLAST of FC876655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
Y2835_ORYSJ1.525e-3572.73B3 domain-containing protein Os02g0683500 OS=Oryza... [more]
Y1410_ORYSJ1.525e-3558.27AP2/ERF and B3 domain-containing protein Os01g0141... [more]
NGA2_ARATH2.601e-3571.72B3 domain-containing transcription factor NGA2 OS=... [more]
Y2641_ORYSJ3.756e-3462.20B3 domain-containing protein Os02g0764100 OS=Oryza... [more]
Y5625_ARATH7.083e-3364.15B3 domain-containing protein At5g06250 OS=Arabidop... [more]
Y2608_ARATH1.578e-3267.68B3 domain-containing protein At2g36080 OS=Arabidop... [more]
Y3158_ARATH7.832e-3257.63B3 domain-containing protein At3g11580 OS=Arabidop... [more]
Y1407_ORYSJ1.023e-3158.27Putative AP2/ERF and B3 domain-containing protein ... [more]
Y1071_ORYSJ3.887e-3163.06Putative B3 domain-containing protein Os10g0537100... [more]
Y1160_ORYSJ3.290e-3061.95B3 domain-containing protein Os11g0156000 OS=Oryza... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2DG08RM1 EHR Citrus clementina cDNA clone KN0AAN2DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876655 ID=FC876655; Name=FC876655; organism=Citrus clementina; type=EST; length=768bp
GCACGAGGAAGTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCA
GCACGCGGAGAAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGAC
TGCTCTTGAACTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTAC
TCCTACTGGAACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCG
GTTCGTCAAGGAGAAGAATTTGAAAGCCGGTGACATTGTTAGCTTTCACA
GATCGACCGGTGGGGATAGGCAGCTTTACATTGATTGGAAAGCCAGAACA
GGACCGGTCGAGAACCCGGTCGAGCCGGTCCAGATGATGAGGCTATTTGG
GGTCAACATTTTCAAAATTCCTGGGAATGGTCTTGTTGGTGTCGATAAGA
TTGGGTGCAACATTAATAATAATAACGACGGCAAAAGGCTTAGAGAAATG
GAGCTCTTGTCTCTAGAGTGCAGCAAAAAACAAAGAATGATTGGAGCTTC
GTAACATCTTTTTTCTTTTTTCTTCTTTTTTGTAATCTTATTTCTTGTTG
TAATTTTTCTTTTCTTTTTTCCTTTTGGAGTTTTTGGAATTTTGAGGAGT
TTTAAGGGGAAAGAAGAGACTGGGGAAGGGTGGTGCCAGTAGTTGCAAGT
TGCAAAGGAAAAGGAAAAGGTTGAATTGTAAATTACAAGTGACAAAAGCT
GAAGAAAGCTGAAATTAGGTTGTAACAAAATTTTATAATTAAAAAAAAAA
AAGAAAAGAAAAAAAAAA
back to top