FC876655

Overview
NameFC876655
Unique NameFC876655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length768
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: NGA4_ARATH (B3 domain-containing transcription factor NGA4 OS=Arabidopsis thaliana GN=NGA4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.633e-29
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGD---------RQLYIDWKAR 297
            SDVGKLNRLVIPKQHAE  FPL+      G +L+F+D  GK+WRFRYSYWNSSQSYV+TKGWSRFVKEK L AGD VSF+R    D         + ++IDW+ R
Sbjct:   38 SDVGKLNRLVIPKQHAENFFPLEDNQN--GTVLDFQDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRGYIPDDNAQPERRRKIMFIDWRPR 140          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y8577_ORYSJ (Putative B3 domain-containing protein Os08g0157700 OS=Oryza sativa subsp. japonica GN=Os08g0157700 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.100e-25
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSKGLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWK 291
            SDVGKLNRLV+PKQHAE+ FP  +  T     L FED  G  WRFRYSYW SSQSYV+TKGWSRFV+   L AGD VSF R+  G  + +ID++
Sbjct:   78 SDVGKLNRLVVPKQHAERFFPAAAAGTQ----LCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRAADG--RYFIDYR 165          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: Y6078_ORYSJ (B3 domain-containing protein Os06g0107800 OS=Oryza sativa subsp. japonica GN=Os06g0107800 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSK--GLLLNFEDVTG--KVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVEN 315
            SDVGKLNRLV+PK +AEK+FPL   + +   G +L FED  G    WRFRYSYW+SSQSYV+TKGWSR+V++K L AGD VSF R+     +L+ID + R   V +
Sbjct:   44 SDVGKLNRLVVPKHYAEKYFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFCRA---GARLFIDCRKRAASVSS 146          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 62/166 (37.35%), Postives = 88/166 (53.01%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGS-----TSKGLL---LNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFHRSTGGDRQLYIDWKARTGPVENPVEPV--QMMRLFGVNIFKIPGNGLVGVDKIGCNINNNNDGKRLREMELLSLECSK 477
            SDVGKLNRLVIPK++A K+ P  S       TS+G+    + F D   + W+FRY YW SSQS+V T+GW+ FVKEKNLK  DI+ F+                T  V N V+ +  Q      +++    GNG V  +++   ++  +D     EM+  +L  SK
Sbjct:  185 SDVGKLNRLVIPKKYAVKYMPFISDDQSEKETSEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVFY----------------TCDVPNNVKTLEGQSKTFLMIDVHHFSGNGFVVPEEVNKTVHEISD----EEMKTETLFTSK 330          
BLAST of FC876655 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.194e-17
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   10 SDVGKLNRLVIPKQHAEKHFPLQSGSTSK-----------GLLLNFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFH 249
            SDVGKLNRLVIPK++A K+ P  S   S+            + + F D   + W+FRY YW SSQS+V T+GW+ FVKEKNLK  D+++F+
Sbjct:  164 SDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEIVGSVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKEKNLKEKDVIAFY 254          
The following BLAST results are available for this feature:
BLAST of FC876655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
NGA4_ARATH1.633e-2961.90B3 domain-containing transcription factor NGA4 OS=... [more]
Y8577_ORYSJ7.100e-2560.64Putative B3 domain-containing protein Os08g0157700... [more]
Y6078_ORYSJ1.211e-2455.66B3 domain-containing protein Os06g0107800 OS=Oryza... [more]
RAVL3_ARATH4.928e-1837.35AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL2_ARATH3.194e-1748.35AP2/ERF and B3 domain-containing transcription fac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DG08RM1 EHR Citrus clementina cDNA clone KN0AAN2DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876655 ID=FC876655; Name=FC876655; organism=Citrus clementina; type=EST; length=768bp
GCACGAGGAAGTGACGTGGGGAAGCTGAACCGGCTCGTGATACCCAAGCA
GCACGCGGAGAAGCACTTCCCTTTACAGAGCGGAAGCACTTCCAAGGGAC
TGCTCTTGAACTTTGAGGATGTCACCGGCAAAGTTTGGAGGTTTAGGTAC
TCCTACTGGAACAGCAGTCAAAGCTACGTTTTGACCAAAGGGTGGAGCCG
GTTCGTCAAGGAGAAGAATTTGAAAGCCGGTGACATTGTTAGCTTTCACA
GATCGACCGGTGGGGATAGGCAGCTTTACATTGATTGGAAAGCCAGAACA
GGACCGGTCGAGAACCCGGTCGAGCCGGTCCAGATGATGAGGCTATTTGG
GGTCAACATTTTCAAAATTCCTGGGAATGGTCTTGTTGGTGTCGATAAGA
TTGGGTGCAACATTAATAATAATAACGACGGCAAAAGGCTTAGAGAAATG
GAGCTCTTGTCTCTAGAGTGCAGCAAAAAACAAAGAATGATTGGAGCTTC
GTAACATCTTTTTTCTTTTTTCTTCTTTTTTGTAATCTTATTTCTTGTTG
TAATTTTTCTTTTCTTTTTTCCTTTTGGAGTTTTTGGAATTTTGAGGAGT
TTTAAGGGGAAAGAAGAGACTGGGGAAGGGTGGTGCCAGTAGTTGCAAGT
TGCAAAGGAAAAGGAAAAGGTTGAATTGTAAATTACAAGTGACAAAAGCT
GAAGAAAGCTGAAATTAGGTTGTAACAAAATTTTATAATTAAAAAAAAAA
AAGAAAAGAAAAAAAAAA
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