FC876716

Overview
NameFC876716
Unique NameFC876716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876716 vs. ExPASy Swiss-Prot
Match: S39A2_HUMAN (Zinc transporter ZIP2 OS=Homo sapiens GN=SLC39A2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 65/292 (22.26%), Postives = 116/292 (39.73%), Query Frame = 3 
Query:    9 LVSTFAGGVSPYFYRW----------NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK----------------------SYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGD--TILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSG 782
            L  T   G++P  ++W               LLG   + GVFLG   MH  +++ E  +    K                       YP+  ++ S G+ L  F + +       G+   + V  EE     +    +     + S G    ++L+L+L FHSVFEG+A+G+  T     +    +  HK      +G+ L+ +     + + +      A+ SP+G+ +G+A+             A+  G+A G F+YV    ++     P+     +AP  K+  V +G
Sbjct:   16 LALTLGCGLTPICFKWFQIDAARGHHRRVLRLLGC-ISAGVFLGAGFMHMTAEALEEIESQIQKFMVQNRSASERNSSGDADSAHMEYPYGELIISLGFFLVFFLESLA-LQCCPGAAGGSTVQDEEWGGAHIFELHSHGHLPSPSKGPLRALVLLLSLSFHSVFEGLAVGLQPTVAATVQLCLAVLAHKGLVVFGVGMRLVHLGTSSRWAVFSI--LLLALMSPLGLAVGLAVTGGDSEGGRGLAQAVLEGVAAGTFLYVTFLEIL-----PRELASPEAPLAKWSCVAAG 298
The following BLAST results are available for this feature:
BLAST of FC876716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
S39A2_HUMAN5.974e-1122.26Zinc transporter ZIP2 OS=Homo sapiens GN=SLC39A2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1BF07RM1 EHR Citrus clementina cDNA clone KN0AAN1BF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876716 ID=FC876716; Name=FC876716; organism=Citrus clementina; type=EST; length=786bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGTGGGGTTTTCATATATGTTGCCATCAACCA
TCTCATTGCCAAAGGGTTTAAGCCACAAAATAAATGTTACTTTGACGCTC
CTTTCTTTAAGTTTCTTGCTGTGCTTAGTGGAGTTG
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