FC876732

Overview
NameFC876732
Unique NameFC876732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:494..1263. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSP 240
            RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+        +++ +++ + V ++  SP
Sbjct:   43 RQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPERVQGPTTTTTI-SHAPRGVSESMNSP 121          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.278e-12
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 183
            RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++     P
Sbjct:   81 RQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.002e-12
Identity = 32/54 (59.26%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 162
            RQRPWGKWAAEIRDP K  RVWLGTF T               RG KAK+NFP+
Sbjct:   65 RQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPE 118          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 52/171 (30.41%), Postives = 75/171 (43.86%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPK------ACLSPVQPSLNQNFNYLNNSDQDYYNNVS----ILEEKPQVNQYGYMGS-FPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWG 480
            RQRPWGKWAAEIRDP++ VRVWLGTF+T              +RG  A++NFP   P         +   K V         CL      L   F+  + + ++ +  VS    +++++P  N   +    F DD   GF   +  +    ++     G N F    FG G
Sbjct:   91 RQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP--PPPVTENVEEASTEVKGVSDFIIGGGECLRSPVSVLESPFSGESTAVKEEFVGVSTAEIVVKKEPSFNGSDFSAPLFSDDDVFGFSTSMSESFGGDLF-----GDNLFADMSFGSG 254          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.536e-11
Identity = 39/101 (38.61%), Postives = 48/101 (47.52%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA-------AAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNN 282
            RQRPWG+WAAEIRDPT+G RVWLGT++T              ++G  A  NFP  T A            SV     KS     LSP     + +F   +N
Sbjct:  102 RQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDVALSPTSVLCDNDFAPFDN 202          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 43/123 (34.96%), Postives = 59/123 (47.97%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQD-YYNNVSILEEKPQVNQYGYMGSFP 366
            RQRPWGKWAAEIRDP K VR+WLGT+NT              +RG  A  NF   TP  A +      S     K   +  + S+  + +   +S  D   + VS+L     V+++  + S P
Sbjct:  126 RQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF-SVTPTTATEKKAPPPSPVKKKKKKNNKSKKSVTASSSISRSSSNDCLCSPVSVLRSPFAVDEFSGISSSP 247          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 44/108 (40.74%), Postives = 54/108 (50.00%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKA-CLSPVQP--SLNQNFNYLNNSDQDYYNNVSI 315
            R+RPWG++AAEIRDP    R WLGTF+T               RG KA+ NF   T    P+     +++KS P A C  P  P  S  QNF Y   + Q  YN  SI
Sbjct:   61 RRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVIMPEPRFSFSNKKSSPSARCPLPSLPLDSSTQNF-YGAPAAQRIYNTQSI 167          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSVKANSQ----KSVPKACLSPVQPSLNQNFNY---------LNNSDQDY 297
            R+RPWG++AAEIRDP K  RVWLGTF+T              +RG KAK NFP       +  P+A   ++  AN+Q    + +  A   PV PS + +  +         LN+   DY
Sbjct:   16 RKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHHQHHRIFLRTGVLNDKTSDY 134          
BLAST of FC876732 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 36/80 (45.00%), Postives = 43/80 (53.75%), Query Frame = 1
Query:    1 RQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSVKANSQKSV 219
            RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP         +P AA     KA++  SV
Sbjct:  140 RQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219          
The following BLAST results are available for this feature:
BLAST of FC876732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
EF113_ARATH5.278e-1242.50Ethylene-responsive transcription factor ERF113 OS... [more]
EF110_ARATH5.278e-1252.46Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH9.002e-1259.26Ethylene-responsive transcription factor RAP2-6 OS... [more]
CRF1_ARATH1.176e-1130.41Ethylene-responsive transcription factor CRF1 OS=A... [more]
PTI6_SOLLC1.536e-1138.61Pathogenesis-related genes transcriptional activat... [more]
CRF2_ARATH3.421e-1134.96Ethylene-responsive transcription factor CRF2 OS=A... [more]
ESR1_ARATH7.621e-1140.74Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF81_ARATH7.621e-1136.13Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF109_ARATH9.953e-1145.00Ethylene-responsive transcription factor ERF109 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AC12RM1 EHR Citrus clementina cDNA clone KN0AAN3AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876732 ID=FC876732; Name=FC876732; organism=Citrus clementina; type=EST; length=769bp
AGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAA
AGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTA
GGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTT
AACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAAGGC
AAACTCTCAGAAATCCGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGCCAA
GTTTGAACCAAAACTTCAATTACTTGAACAACTCCGATCAGGATTACTAC
AACAATGTGAGTATTCTGGAGGAGAAACCACAAGTGAATCAGTATGGATA
TATGGGCTCCTTCCCTGATGATGGAGAACTAGGATTCAAACCCTTTGTGC
CAACAGCTGATGATACTCCTGTGTACTTCAACTCTGACCAAGGCAGTAAC
TCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAAAGACTCC
TGAAATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAATCTCAGT
TTGTGGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAACTCTGAG
AATGCTGTGCCTGTTCAGGATAACAATGGAAAGTCTCTGTCTGATGAGCT
TTTGGCTTTTGACAATCANGTGAAGTTCTTGCCAATGCCGTATCCTGAAG
GAAGCTGGGAGGCCTCCCTCGATGCCTTCCTCAATGGTGACAACACCCAG
GATGGTGAAAACTTGATGA
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