FC876735

Overview
NameFC876735
Unique NameFC876735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana GN=At2g24040 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 2
Query:  143 STATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 295
            S   C +I +A++LPP+GV L+ GC   EF+ICL+LT LGY+PGIIYA+YAI
Sbjct:    4 SCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAI 55          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 25/48 (52.08%), Postives = 40/48 (83.33%), Query Frame = 2
Query:  158 VDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITQ 301
            +++L A+ +PP+GVFL++G   EFW+CLLLT+  +IPG+IYA+Y +T+
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.173e-11
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  131 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 295
            MA      C +IL+A++LPPLGV LK GC   EF ICL+LTILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: YCU3_CAEEL (UPF0057 membrane protein T23F2.3 OS=Caenorhabditis elegans GN=T23F2.3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  152 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 295
            TC DI   + AV+LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCTDIPKFICAVLLPPIGVFLEKGCDYHLAICILLTILGYIPGIIYACYVI 54          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: PMP3_GIBZE (Plasma membrane proteolipid 3 OS=Gibberella zeae GN=PMP3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 31/44 (70.45%), Postives = 40/44 (90.91%), Query Frame = 2
Query:  164 ILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 295
            I+LA+ILPP+GVFL+ GC A+F+I +LLTILGYIPGII+A+Y I
Sbjct:   21 IILAIILPPVGVFLERGCGADFFINILLTILGYIPGIIHALYII 64          
BLAST of FC876735 vs. ExPASy Swiss-Prot
Match: YCU4_CAEEL (UPF0057 membrane protein T23F2.4 OS=Caenorhabditis elegans GN=T23F2.4 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 2
Query:  152 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 295
            TC+DI   L A++LPP+GVFL+ GC     IC+LLTILGYIPGIIYA Y I
Sbjct:    4 TCMDIPKFLFALLLPPVGVFLEKGCTHHLAICILLTILGYIPGIIYACYII 54          
The following BLAST results are available for this feature:
BLAST of FC876735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RC22_ARATH1.860e-1159.62UPF0057 membrane protein At2g24040 OS=Arabidopsis ... [more]
RC21_ARATH1.860e-1152.08UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]
RC23_ARATH3.173e-1164.29UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
YCU3_CAEEL7.068e-1164.71UPF0057 membrane protein T23F2.3 OS=Caenorhabditis... [more]
PMP3_GIBZE7.068e-1170.45Plasma membrane proteolipid 3 OS=Gibberella zeae G... [more]
YCU4_CAEEL9.231e-1164.71UPF0057 membrane protein T23F2.4 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1BG05RM1 EHR Citrus clementina cDNA clone KN0AAN1BG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876735 ID=FC876735; Name=FC876735; organism=Citrus clementina; type=EST; length=639bp
CCCCGGGCTGCACGTACAAATAACAAAAGCAATTACTCAAAACCTTAAAC
ACTTCTTTACTCCAAGTTCTTGCTTTTTGACTCCAAATTTTATTTTATTC
CATTTTACACTTTTTAAGAATCAATCAAAGATGGCAGATGGAAGCACAGC
AACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCTCCTCTTGGAGTCT
TTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTGCTCTTGACC
ATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTTATGCCATCACCCA
GAAGTGATCTCTCTTCTTCATCTGTACGTCCCTGTACTCTTTAATTTCCG
CACAGCTTTTGGAAATCTTTTTATAAACTTTTTTTTTAATTTATAACAAT
AAGAAATTGGTAATTTATTTACGATTTTACAGAACTTCTATATATTTACT
GAATTCGGGTCATCTCTCAAAAGCAATATAAAAAAAAATTGATTTTTTTA
AAAATAAATTTACGTTATAAATTTATTGATATCTATAATCTGAAATTTAT
TGTCTAAAAAACGTGACCCAGATTTAACCTCAACAAATAATTTATGAGGA
GTGCTACCGGTAAATATGATAATCTTTTTCTATTTTACA
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