FC876740

Overview
NameFC876740
Unique NameFC876740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10397 contig Ccv1_Contig10397:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: MAAI_CAEEL (Probable maleylacetoacetate isomerase OS=Caenorhabditis elegans GN=gst-42 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYQYVEENLPNKSPL--LLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANAR 339
            M+ +   L  YW S  + RV+ AL LK V Y+Y   +L ++     L   NP   K+P  V +G+ + ESL IIEY++E     PLLP+DP +RA+AR
Sbjct:    1 MSNQKPVLYSYWRSSCSWRVRIALALKNVDYEYKTVDLLSEEAKSKLKEINPA-AKVPTFVVDGQVITESLAIIEYLEETHPDVPLLPKDPIKRAHAR 97          
BLAST of FC876740 vs. ExPASy Swiss-Prot
Match: GSTZ1_DIACA (Glutathione S-transferase 1 OS=Dianthus caryophyllus GN=GST1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 52/164 (31.71%), Postives = 85/164 (51.83%), Query Frame = 1
Query:   61 ESVKLLGYWASPFALRVKWALKLKGVHYQYVEENL---PNKSPLLLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDDKCVP----EVMGAFASKGEEQEKAAKARENLK----MLERALEGK--PFFGGDKIGFLDI 513
            + ++L  +  S  A RV+ AL LKG+ ++Y   +L    + +P  L+ NP+   +PVLVH    +A+SL II Y++E + +NPLLP+D  +RA     A        P     V+     K    EK + A+ ++K     LE+ L+G    +  GD++G  D+
Sbjct:    7 QKMQLYSFSLSSCAWRVRIALHLKGLDFEYKAVDLFKGEHLTPEFLKLNPL-GYVPVLVHGDIVIADSLAIIMYLEEKFPENPLLPQDLQKRALNYQAANIVTSNIQPLQNLAVLNYIEEKLGSDEKLSWAKHHIKKGFSALEKLLKGHAGKYATGDEVGLADL 169          
The following BLAST results are available for this feature:
BLAST of FC876740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAAI_CAEEL4.580e-1140.82Probable maleylacetoacetate isomerase OS=Caenorhab... [more]
GSTZ1_DIACA4.580e-1131.71Glutathione S-transferase 1 OS=Dianthus caryophyll... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1BG11RM1 EHR Citrus clementina cDNA clone KN0AAN1BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876740 ID=FC876740; Name=FC876740; organism=Citrus clementina; type=EST; length=672bp
GCACGAGGCATTTAGATATTATCACGCGCTGCTTTTGCTTGGCGAGCAAT
AATGGCTGAAGAAAGTGTGAAGTTGCTGGGTTACTGGGCAAGCCCCTTTG
CTCTTAGAGTTAAGTGGGCGCTCAAACTGAAGGGAGTTCACTACCAATAT
GTTGAAGAGAATCTCCCCAACAAGAGTCCCTTGCTGTTGCGATACAATCC
GGTTTATAAGAAGATTCCAGTTCTTGTACACAATGGGAAACCATTGGCAG
AATCACTACTGATCATCGAATACATTGATGAAGCGTGGAAACAAAATCCT
CTCCTCCCAGAAGATCCTTACGAACGGGCCAATGCACGTTTCTGGGCAAA
ATTCTTTGATGACAAGTGTGTACCTGAAGTCATGGGAGCATTTGCCTCAA
AAGGGGAGGAACAAGAGAAAGCTGCAAAAGCTCGAGAGAATCTGAAGATG
CTGGAAAGGGCTCTGGAGGGGAAGCCCTTTTTTGGTGGTGACAAGATAGG
CTTTCTGGACATTGCTGTGGGGTGGATTGGAATCTGGGGTCGAATTGTTG
AGGAAATTGCACGTGTCAGCCTGATTGATGCATAGACGATGCCTTTGCTT
ACTGCTTGGTTGAACAATTTTCTTGAAGTTCCTGTTATCAAAGCATGCAT
ACCATCTTGGCACGAATTGCTT
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