FC876750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35 Identity = 91/251 (36.25%), Postives = 143/251 (56.97%), Query Frame = 1 Query: 13 LLVLPNIL------GSSGANY--AKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIF-ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKK-FLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDK-FSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726 +L LP I+ S+G++ K L +L+QYIPR + LPL + T +F E+AWA L + L+ HIVG+ WYL L+R + C ++AC ++ +C FL CG+ N ++ +S ++ +D + + F +GIY QA+ + + + I +Y Y L+WG Q +STL S + E++F++++ GL+LFA LIGNMQ +LQ+L R +M ++RRD EQWM HR LP+ Sbjct: 199 VLPLPQIVVWRFLQSSNGSDVLATKQALLFIVLVQYIPRFLRVLPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLALERNDACWQEACIDAG--NCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRADLDDNNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQ 447
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34 Identity = 89/249 (35.74%), Postives = 137/249 (55.02%), Query Frame = 1 Query: 10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQ-SSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSS---IQDC-KKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDC---FEKDKFSYGIYEQAVKLTTE---NSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723 I LV+P + AN+A + L +L+QYIPR + PL +TGFI ++AWA NL + L+ H++G+ WYL + R C + C + + DC FLDC E + Q W++ + Q S C F +G++ +A TT+ +++Y+Y L+WG + +S+ N T S ++GE LF + I GL+LF LIGNMQ+ LQ++ R + ++RRD E+WMRHR+LP Sbjct: 158 IWLVIPAATNGT-ANHANSTLALIVLVQYIPRSFIIFPLNQRIIKTTGFIAKTAWAGAAYNLLLYILASHVLGAMWYLSSIGRQFSCWSNVCKKDNALRVLDCLPSFLDCK----SLEQPERQYWQNVT--QVLSHCDATSSTTNFKFGMFAEA--FTTQVATTDFVSKYLYCLWWGLRNLSSYGQNITTSVYLGETLFCITICIFGLILFTLLIGNMQSSLQSMSVRVEEWRVKRRDTEEWMRHRQLP 397
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 5.775e-34 Identity = 83/242 (34.30%), Postives = 129/242 (53.31%), Query Frame = 1 Query: 10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726 +L V+PN+ + K+ L I QYIPR+ + PL+ + T G + E+AWA NL + L+ H+ G+ WYL ++R ++C R+AC +FL C +G + D S D F++GI+ A+K + + ++ Y +WG + +S L N S FVGE++F ++I GL+LFA LIGNMQ +L++ R +M +R+RD EQWM HR LP+ Sbjct: 187 VLAVIPNV-NKPVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCNFRFLYC---DGNSSVRNDFLTTSCPFINP-DDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPD 423
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34 Identity = 81/229 (35.37%), Postives = 123/229 (53.71%), Query Frame = 1 Query: 58 AKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFE---KDKFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726 AK LL+ I QY+PR+ + PLF + T G + E+AWA +NLF + L+ H+ GS WYL ++R ++C R+AC K +C H + + +G+ D E F++GI+ A++ + ++ Y +WG + +S L N S F GE++F + I GL+LFA LIGNMQ +LQ+ R +M ++RRD EQWM HR LP+ Sbjct: 206 AKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTETAWAGAALNLFLYMLASHVFGSFWYLISIERKDRCWREAC--------AKIQNCTHAYLYCSPTGEDNRLFLNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPD 426
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33 Identity = 83/251 (33.07%), Postives = 137/251 (54.58%), Query Frame = 1 Query: 10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCK-KFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDK--------FSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726 +L V+P++ + K+ L+ +I+ QY+PR+ + PL+ + T G + E+AWA NL + L+ H+ G+ WYL ++R ++C ++AC + + C KFL C + ++ S N + C D F++GI+ A+K + + ++ Y +WG + +S L N S FVGE++F ++I GL+LFA LIGNMQ +L++ R +M +R+RD EQWM HR LPE Sbjct: 187 VLAVIPSV-NQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWQEACEKT--KGCNMKFLYCEND------------RNVSNNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPE 422
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.858e-32 Identity = 79/244 (32.38%), Postives = 128/244 (52.46%), Query Frame = 1 Query: 16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAG-QSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQT--WKSWSGNQQA----SDCFEKD-KFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723 LV+P ++ +L L Q++P++Y + L Q TG+IF + W F +NL + ++ H+ G WY+ +QRV C+R C + +C L C S T + SGN + C + + F YGIY A+ + + NS+ + +Y +FWG +ST A + P+ EV+F++ ++ GLLLF LIGN+Q FL A++ ++ M +R RD+E WM+ R+LP Sbjct: 238 LVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVAGGCWYVLAIQRVASCIRQQCMRTG--NCNLSLACKEEVCYQFVSPTSTVGYPCLSGNLTSVVNKPMCLDSNGPFRYGIYRWALPVISSNSLAVKILYPIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLP 479
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 5.059e-30 Identity = 73/241 (30.29%), Postives = 128/241 (53.11%), Query Frame = 1 Query: 16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLP-LFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHG--NGGAEYSQDQTWKSWSGNQQA-SDCFE-KDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723 +V+P++L ++L L QY+P++Y + L + +G+IF + W +N+ + ++ H G+ WYL G+QR +CL++ C N+ D + L C G D+ +W+ N QA S C + ++YG Y+ ++L + S + + ++ +FWG +ST GN + EV+F + ++ GLLL LIGN++ FL A ++ M L+ R++E WM+ R LP Sbjct: 206 VVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAAGACWYLLGVQRSAKCLKEQCENTIGCDLR-MLSCKEPVYYGTTVMVLDRARLAWAQNHQARSVCLDINTNYTYGAYQWTIQLVSSESRLEKILFPIFWGLMTLSTF-GNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLP 444
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29 Identity = 78/248 (31.45%), Postives = 124/248 (50.00%), Query Frame = 1 Query: 10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQ-SSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDAC-------HNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQA-VKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726 I V+PN A + + L +L+QY+PR LPL +TG ++AW+ NL + L H++GS WY+ +QR ++C R C H+ S FLDCG + + + + S +D + F +G++ A T + +Y Y L+WG + +S+ + S E +F+ I GL+ F+ LIGN+QN+LQ+ R + +RRRD E+WMRHR+LP+ Sbjct: 163 IWFVIPNAGEFRYAAHQNHTLSLIVLIQYVPRFLVMLPLNRRIIKATGVAAKTAWSGAAYNLILYLLVSHVLGSVWYVLSIQRQHECWRRECIKEMNATHSPSCS--LLFLDCGSLHDPGRQAWMRITRVLSNCDARND--DDQHFQFGMFGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSLAASTLSSETIFSCFICVAGLVFFSHLIGNVQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPD 406
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27 Identity = 76/243 (31.28%), Postives = 124/243 (51.03%), Query Frame = 1 Query: 16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFL-DCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKL----TTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726 +V+ ++ S + ++ +L+ IL QY+PR+ + PL+ + G + ES WA +NLF + L ++ G+ WYL ++R ++C R AC +S DC + D G++ + + + F +G+Y A+K ++VY +WG + IS L N S GE+ F + I GLLLFA LIGN+Q +LQ+ R +M +RRD E+WM +R +PE Sbjct: 146 VVVLTLIPLSASLVSERILKWIILSQYVPRIIRMYPLYKEVTRAFGTVAESKWAGAALNLFLYMLHSYVFGAFWYLSSIERKSKCWRAACARTS--DCNLTVTDLLCKRAGSD--NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPE 384
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24 Identity = 72/243 (29.63%), Postives = 120/243 (49.38%), Query Frame = 1 Query: 16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFL-DCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKL----TTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726 +V+ ++ S + ++ +L+ IL QY+PR+ + PL+ + G + ES +N F + L ++ G+ WYL ++R + C R AC +S DC + D G++ + + + F +G+Y A+K ++VY +WG + IS L N S GE+ F + I GLLLFA LIGN+Q +LQ+ R +M ++RD E+WM +R +PE Sbjct: 146 VVVLTLIPLSASLVSERILKWIILSQYVPRIIRMYPLYKEVTRAFGTVAESKRVGAALNFFLYMLHSYVCGAFWYLSSIERKSTCWRAACARTS--DCNLTVTDLLCKRAGSD--NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPE 384 The following BLAST results are available for this feature:
BLAST of FC876750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876750 ID=FC876750; Name=FC876750; organism=Citrus clementina; type=EST; length=728bpback to top |