FC876750

Overview
NameFC876750
Unique NameFC876750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.999e-35
Identity = 91/251 (36.25%), Postives = 143/251 (56.97%), Query Frame = 1
Query:   13 LLVLPNIL------GSSGANY--AKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIF-ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKK-FLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDK-FSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            +L LP I+       S+G++    K  L   +L+QYIPR  + LPL +    T  +F E+AWA     L  + L+ HIVG+ WYL  L+R + C ++AC ++   +C   FL CG+ N       ++  +S   ++  +D  + +  F +GIY QA+   + +  + I +Y Y L+WG Q +STL      S +  E++F++++   GL+LFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP+
Sbjct:  199 VLPLPQIVVWRFLQSSNGSDVLATKQALLFIVLVQYIPRFLRVLPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLALERNDACWQEACIDAG--NCSTDFLYCGNQNMDGYAVWNRAKESVLKSKCRADLDDNNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQ 447          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 89/249 (35.74%), Postives = 137/249 (55.02%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQ-SSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSS---IQDC-KKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDC---FEKDKFSYGIYEQAVKLTTE---NSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723
            I LV+P     + AN+A + L   +L+QYIPR +   PL      +TGFI ++AWA    NL  + L+ H++G+ WYL  + R   C  + C   +   + DC   FLDC       E  + Q W++ +  Q  S C        F +G++ +A   TT+      +++Y+Y L+WG + +S+   N T S ++GE LF + I   GL+LF  LIGNMQ+ LQ++  R  +  ++RRD E+WMRHR+LP
Sbjct:  158 IWLVIPAATNGT-ANHANSTLALIVLVQYIPRSFIIFPLNQRIIKTTGFIAKTAWAGAAYNLLLYILASHVLGAMWYLSSIGRQFSCWSNVCKKDNALRVLDCLPSFLDCK----SLEQPERQYWQNVT--QVLSHCDATSSTTNFKFGMFAEA--FTTQVATTDFVSKYLYCLWWGLRNLSSYGQNITTSVYLGETLFCITICIFGLILFTLLIGNMQSSLQSMSVRVEEWRVKRRDTEEWMRHRQLP 397          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.775e-34
Identity = 83/242 (34.30%), Postives = 129/242 (53.31%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            +L V+PN+     +   K+ L   I  QYIPR+ +  PL+   + T G + E+AWA    NL  + L+ H+ G+ WYL  ++R ++C R+AC         +FL C   +G +    D    S        D      F++GI+  A+K  +   +    ++ Y  +WG + +S L  N   S FVGE++F ++I   GL+LFA LIGNMQ +L++   R  +M +R+RD EQWM HR LP+
Sbjct:  187 VLAVIPNV-NKPVSLITKDYLITVIFTQYIPRILRIYPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCNFRFLYC---DGNSSVRNDFLTTSCPFINP-DDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPD 423          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34
Identity = 81/229 (35.37%), Postives = 123/229 (53.71%), Query Frame = 1
Query:   58 AKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFE---KDKFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            AK LL+  I  QY+PR+ +  PLF   + T G + E+AWA   +NLF + L+ H+ GS WYL  ++R ++C R+AC         K  +C H       + +      +G+    D  E      F++GI+  A++  +        ++ Y  +WG + +S L  N   S F GE++F + I   GL+LFA LIGNMQ +LQ+   R  +M ++RRD EQWM HR LP+
Sbjct:  206 AKELLKWVIFCQYVPRIARIYPLFKEVTRTSGLVTETAWAGAALNLFLYMLASHVFGSFWYLISIERKDRCWREAC--------AKIQNCTHAYLYCSPTGEDNRLFLNGSCPLIDPEEITNSTVFNFGIFADALQSGVVESRDFPKKFFYCFWWGLRNLSALGQNLKTSAFEGEIIFAIVICISGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPD 426          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 83/251 (33.07%), Postives = 137/251 (54.58%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCK-KFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDK--------FSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            +L V+P++     +   K+ L+ +I+ QY+PR+ +  PL+   + T G + E+AWA    NL  + L+ H+ G+ WYL  ++R ++C ++AC  +  + C  KFL C +             ++ S N   + C   D         F++GI+  A+K  +   +    ++ Y  +WG + +S L  N   S FVGE++F ++I   GL+LFA LIGNMQ +L++   R  +M +R+RD EQWM HR LPE
Sbjct:  187 VLAVIPSV-NQPVSLLTKDYLKFSIIAQYVPRILRMYPLYTEVTRTSGIVTETAWAGAAWNLSLYMLASHVFGALWYLISVEREDRCWQEACEKT--KGCNMKFLYCEND------------RNVSNNFLTTSCPFLDPGDITNSTIFNFGIFTDALKSGVVESHDFWKKFFYCFWWGLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPE 422          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.858e-32
Identity = 79/244 (32.38%), Postives = 128/244 (52.46%), Query Frame = 1
Query:   16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAG-QSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQT--WKSWSGNQQA----SDCFEKD-KFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723
            LV+P ++          +L    L Q++P++Y  + L    Q  TG+IF + W  F +NL  + ++ H+ G  WY+  +QRV  C+R  C  +   +C   L C         S   T  +   SGN  +      C + +  F YGIY  A+ + + NS+  + +Y +FWG   +ST A +  P+    EV+F++ ++  GLLLF  LIGN+Q FL A++ ++  M +R RD+E WM+ R+LP
Sbjct:  238 LVVPKLIREEKVKLIMTILLLIFLFQFLPKIYHCICLMRRMQKVTGYIFGTIWWGFALNLIAYFIASHVAGGCWYVLAIQRVASCIRQQCMRTG--NCNLSLACKEEVCYQFVSPTSTVGYPCLSGNLTSVVNKPMCLDSNGPFRYGIYRWALPVISSNSLAVKILYPIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLP 479          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.059e-30
Identity = 73/241 (30.29%), Postives = 128/241 (53.11%), Query Frame = 1
Query:   16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLP-LFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHG--NGGAEYSQDQTWKSWSGNQQA-SDCFE-KDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723
            +V+P++L         ++L    L QY+P++Y  +  L    + +G+IF + W    +N+  + ++ H  G+ WYL G+QR  +CL++ C N+   D +  L C      G      D+   +W+ N QA S C +    ++YG Y+  ++L +  S + + ++ +FWG   +ST  GN   +    EV+F + ++  GLLL   LIGN++ FL A   ++  M L+ R++E WM+ R LP
Sbjct:  206 VVIPSLLKRGSVTLVVSVLLVTFLFQYLPKIYHSIRHLRRNATLSGYIFGTVWWGIALNMIAYFVAAHAAGACWYLLGVQRSAKCLKEQCENTIGCDLR-MLSCKEPVYYGTTVMVLDRARLAWAQNHQARSVCLDINTNYTYGAYQWTIQLVSSESRLEKILFPIFWGLMTLSTF-GNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLP 444          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 78/248 (31.45%), Postives = 124/248 (50.00%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQ-SSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDAC-------HNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQA-VKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            I  V+PN      A +  + L   +L+QY+PR    LPL      +TG   ++AW+    NL  + L  H++GS WY+  +QR ++C R  C       H+ S      FLDCG  +     +  +  +  S     +D  +   F +G++  A     T +    +Y Y L+WG + +S+   +   S    E +F+  I   GL+ F+ LIGN+QN+LQ+   R  +  +RRRD E+WMRHR+LP+
Sbjct:  163 IWFVIPNAGEFRYAAHQNHTLSLIVLIQYVPRFLVMLPLNRRIIKATGVAAKTAWSGAAYNLILYLLVSHVLGSVWYVLSIQRQHECWRRECIKEMNATHSPSCS--LLFLDCGSLHDPGRQAWMRITRVLSNCDARND--DDQHFQFGMFGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSLAASTLSSETIFSCFICVAGLVFFSHLIGNVQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPD 406          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 76/243 (31.28%), Postives = 124/243 (51.03%), Query Frame = 1
Query:   16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFL-DCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKL----TTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            +V+  ++  S +  ++ +L+  IL QY+PR+ +  PL+   +   G + ES WA   +NLF + L  ++ G+ WYL  ++R ++C R AC  +S  DC   + D      G++    +   +       +       F +G+Y  A+K             ++VY  +WG + IS L  N   S   GE+ F + I   GLLLFA LIGN+Q +LQ+   R  +M  +RRD E+WM +R +PE
Sbjct:  146 VVVLTLIPLSASLVSERILKWIILSQYVPRIIRMYPLYKEVTRAFGTVAESKWAGAALNLFLYMLHSYVFGAFWYLSSIERKSKCWRAACARTS--DCNLTVTDLLCKRAGSD--NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKRRDTEKWMSYRVIPE 384          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 72/243 (29.63%), Postives = 120/243 (49.38%), Query Frame = 1
Query:   16 LVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFL-DCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKL----TTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            +V+  ++  S +  ++ +L+  IL QY+PR+ +  PL+   +   G + ES      +N F + L  ++ G+ WYL  ++R + C R AC  +S  DC   + D      G++    +   +       +       F +G+Y  A+K             ++VY  +WG + IS L  N   S   GE+ F + I   GLLLFA LIGN+Q +LQ+   R  +M  ++RD E+WM +R +PE
Sbjct:  146 VVVLTLIPLSASLVSERILKWIILSQYVPRIIRMYPLYKEVTRAFGTVAESKRVGAALNFFLYMLHSYVCGAFWYLSSIERKSTCWRAACARTS--DCNLTVTDLLCKRAGSD--NIRFLNTSCPLIDPAQITNSTDFDFGMYIDALKSGVLEVKPKDFPRKFVYCFWWGLRNISALGQNLETSNSAGEIFFAIIICVSGLLLFAVLIGNVQKYLQSSTTRVDEMEEKKRDTEKWMSYREIPE 384          
The following BLAST results are available for this feature:
BLAST of FC876750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC5_ARATH3.999e-3536.25Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG18_ARATH4.422e-3435.74Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNG13_ARATH5.775e-3434.30Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC3_ARATH7.542e-3435.37Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNG10_ARATH1.680e-3333.07Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC2_ARATH1.858e-3232.38Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH5.059e-3030.29Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG16_ARATH4.283e-2931.45Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG12_ARATH8.930e-2731.28Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNG11_ARATH5.418e-2429.63Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AD11RM1 EHR Citrus clementina cDNA clone KN0AAN3AD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876750 ID=FC876750; Name=FC876750; organism=Citrus clementina; type=EST; length=728bp
GGCACGAGGATCTTGTTAGTACTACCCAATATCTTGGGATCATCTGGCGC
AAATTATGCCAAAAATCTCTTACGTGCTGCTATTCTTCTTCAGTACATTC
CCAGGCTGTATAAGTTTCTACCCCTATTTGCCGGTCAGTCATCGACTGGC
TTCATATTTGAGTCTGCATGGGCAAATTTTTTTATTAATCTTTTCACCTT
CACATTATCTGGTCACATTGTTGGGTCAGGCTGGTACCTCTTCGGGTTAC
AGAGGGTTAATCAATGTCTTCGAGATGCCTGCCACAATTCTTCAATCCAA
GATTGCAAAAAATTCTTAGATTGTGGCCATGGGAATGGTGGTGCAGAATA
TAGTCAAGATCAAACATGGAAGAGCTGGAGTGGCAATCAACAAGCTAGTG
ATTGTTTTGAGAAGGATAAATTTTCTTATGGAATTTATGAACAAGCTGTC
AAACTTACTACAGAAAATAGTATCATCACCAGATATGTGTATTCACTGTT
TTGGGGATTCCAGCAAATCAGTACTCTTGCGGGAAATCAAACCCCCAGCT
ATTTTGTTGGGGAAGTCCTTTTTACCATGGCCATCATTGGAGTAGGCCTC
TTGCTCTTTGCTTTTCTCATTGGAAATATGCAGAACTTTCTCCAGGCTCT
TGTAAAGAGGAGGTTGGATATGTCATTAAGACGTCGTGATGTGGAGCAAT
GGATGAGACATCGACGCTTGCCTGAACA
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