FC876815

Overview
NameFC876815
Unique NameFC876815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:110..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: BEV1B_BETVE (Major pollen allergen Bet v 1-B OS=Betula verrucosa GN=BETV1B PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.056e-32
Identity = 73/160 (45.62%), Postives = 102/160 (63.75%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF    E TS +P  +LFK F+L+ DTL+PKV PQ + +VE I G+GGPG+IKK  F EG  +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS   +  K++ K   E+K E +K   EK + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: BEV1F_BETVE (Major pollen allergen Bet v 1-F/I OS=Betula verrucosa GN=BETV1F PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.685e-32
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF   +E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGPG+IKK +F EG  +KY K RVD +D  N  Y+Y+ IEG   GD    T++ +S E K+V TP+GGS   +  K++ K   E+K EQ+K   E  + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYEIEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD----TLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: BEV1E_BETVE (Major pollen allergen Bet v 1-E OS=Betula verrucosa GN=BETV1E PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.685e-32
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF    E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGPG+IKK +F EG+ +KY K RVD +D  N  Y+Y+ IEG   GD    T++ +S E K+V TP+GGS   +  K++ K   E+K EQ+K   E  + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGD----TLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: BEV1C_BETVE (Major pollen allergen Bet v 1-C OS=Betula verrucosa GN=BETV1C PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.685e-32
Identity = 73/160 (45.62%), Postives = 102/160 (63.75%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF    E TS +P  +LFK F+L+ DTL+PKV PQ + +VE I G+GGPG+IKK  F EG  +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS   +  K++ K   E+K E +K   EK + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDQEMKAEHMKAIKEKGEALLRAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: BEV1K_BETVE (Major pollen allergen Bet v 1-K OS=Betula verrucosa GN=BETV1K PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.507e-32
Identity = 73/160 (45.62%), Postives = 102/160 (63.75%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF    E TS +P  +LFK F+L+ DTL+PKV PQ + +VE I G+GGPG+IKK  F EG  +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS   +  K++ K   E+K E +K   EK + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: BEV1J_BETVE (Major pollen allergen Bet v 1-J OS=Betula verrucosa GN=BETV1J PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 73/162 (45.06%), Postives = 102/162 (62.96%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF    E TS +P  +LFK F+L  D L PKV PQ + +VE I G+GGPG+IKK +F EG  +KY K RVD +D  N  Y+Y+ IEG   GD    T++ +S E K+V TP+GGS   +  K++ K   E+K EQ+K   E  + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGD----TLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: ABR18_PEA (ABA-responsive protein ABR18 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.020e-31
Identity = 69/159 (43.40%), Postives = 105/159 (66.04%), Query Frame = -2
Query:  156 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 632
            MGVFT   + TST+PP KLFK  V   D ++PKV+  + K VE++ G+GGPG++KK  FVEG    Y  H+V+A+D     YNY+ + G G ++I  ++ +S+E+K+   P+GGS   +++K++ K  A+  E++V+ G  K   +FKA+EAY LANPN
Sbjct:    1 MGVFTYENDTTSTVPPAKLFKAVVHDADLIVPKVVDSI-KTVEILEGNGGPGTVKKLTFVEGGQTLYVLHKVEAIDDAKFEYNYSIVGGVGISDI--VEKISFEAKLFEGPNGGSVGKMIVKYHTKGDAKPIEKEVEEGKAKGDALFKAIEAYVLANPN 156          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: MPAG1_ALNGL (Major pollen allergen Aln g 1 OS=Alnus glutinosa PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.333e-31
Identity = 76/162 (46.91%), Postives = 100/162 (61.73%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEG--EGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF    E  S +P  +LFK F+L  D LLPKV P+ V +VE I G+GGPG+IKK  F EG  +KY K RVD +D+ N  Y+++ IEG   GDA    ++ V  E K+V  PDGGS   +  KF+ K   EI  EQ+K   EK  G+ KA+E+Y LA+ +A
Sbjct:    1 MGVFNYEAETPSVIPAARLFKAFILDGDKLLPKVAPEAVSSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDRVNFKYSFSVIEGGAVGDA----LEKVCNEIKIVAAPDGGSILKISNKFHTKGDHEINAEQIKIEKEKAVGLLKAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: BEV1M_BETVE (Major pollen allergen Bet v 1-M/N OS=Betula verrucosa GN=BETV1M PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.273e-31
Identity = 72/160 (45.00%), Postives = 100/160 (62.50%), Query Frame = -2
Query:  153 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 632
            MGVF    E TS +P  +LFK F+L  D L+PKV PQ + +VE I G+GGPG+IKK  F EG  +KY K RVD +D  N  Y+Y+ I  EG A   T++ +  E K+V TPDGGS   +  K++ K   E+K E +K   EK + + +A+E+Y LA+ +A
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILDGDNLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMI--EGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDA 158          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: MPAC1_CARBE (Major pollen allergen Car b 1 isoforms 1A and 1B OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.969e-31
Identity = 70/159 (44.03%), Postives = 99/159 (62.26%), Query Frame = -2
Query:  162 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 632
            MGVF    E  S +P  +LFK +VL  D L+PKV PQV+ +VE + G+GGPG+IK   F EG+ +K+ K RVD +D  N  YNYT IEG+  GD     ++ VS+E K+V  P GGS   +  KF+ K   E+  E++KG  E  + + +A+E+Y LA+
Sbjct:    1 MGVFNYEAETPSVIPAARLFKSYVLDGDKLIPKVAPQVISSVENVGGNGGPGTIKNITFAEGIPFKFVKERVDEVDNANFKYNYTVIEGDVLGD----KLEKVSHELKIVAAPGGGSIVKISSKFHAKGYHEVNAEKMKGAKEMAEKLLRAVESYLLAH 155          
The following BLAST results are available for this feature:
BLAST of FC876815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
BEV1B_BETVE2.056e-3245.63Major pollen allergen Bet v 1-B OS=Betula verrucos... [more]
BEV1F_BETVE2.685e-3245.06Major pollen allergen Bet v 1-F/I OS=Betula verruc... [more]
BEV1E_BETVE2.685e-3245.06Major pollen allergen Bet v 1-E OS=Betula verrucos... [more]
BEV1C_BETVE2.685e-3245.63Major pollen allergen Bet v 1-C OS=Betula verrucos... [more]
BEV1K_BETVE3.507e-3245.63Major pollen allergen Bet v 1-K OS=Betula verrucos... [more]
BEV1J_BETVE5.981e-3245.06Major pollen allergen Bet v 1-J OS=Betula verrucos... [more]
ABR18_PEA1.020e-3143.40ABA-responsive protein ABR18 OS=Pisum sativum PE=2... [more]
MPAG1_ALNGL1.333e-3146.91Major pollen allergen Aln g 1 OS=Alnus glutinosa P... [more]
BEV1M_BETVE2.273e-3145.00Major pollen allergen Bet v 1-M/N OS=Betula verruc... [more]
MPAC1_CARBE2.969e-3144.03Major pollen allergen Car b 1 isoforms 1A and 1B O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC01RM1 EHR Citrus clementina cDNA clone KN0AAN1CC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876815 ID=FC876815; Name=FC876815; organism=Citrus clementina; type=EST; length=666bp
TTTTTTTTTTTATTTACCCAAAAGCCAATTATATAAATTGGCATATTTGA
AAACAAAAAGACACGACATACGGAAGCCATAAACATGATTATTCATAATG
TTGCAACAAAGGCGACCCAAGTGCGGTGAAGTGTTGACGTAAAAGCTTAT
ACGGCATTGGGGTTTGCCAAGGCATAGGCTTCCAGAGCCTTAAAAATTCC
CTTCTCCTTTTCCAAGCCTCCCTTAACCTGCTCTTCCTTAATCTCGGCAC
CTGGTTTGGGATAGAACTTGATAACAACGGTGCTCTTGCTTCCTCCGTCA
GGGGTGCCCACAACCTTACTCTCATAAGAAACATGATCAATAGTAGGGAT
GTTAGCATCACCCTCACCTTCAATTGCCGTGTAATTGTATATCTTGTTCT
CTTTGTCCAATGCATCAACCCTATGCTTAAAGTACTTCCAATCAACACCT
TCAACAAAGTTAAACTTCTTGATGCTTCCAGGGCCTCCATCCCCTGAAAT
CAATTCAACGTTCTTTACAACCTGAGGCAGGACTTTGGGCAGAAGGGTGT
CGAACTGAAGGACAAAAAGTTTGAACAACTTTTCAGGGGGGAGAGTGCTT
GTATCCTCTACATTCAACGTGAAAACACCCATGATTGTCTAAAAGTTAAA
CAAAGAAAGAAGATGA
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