FC876815

Overview
NameFC876815
Unique NameFC876815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:110..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: L18A_LUPLU (Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 61/160 (38.12%), Postives = 100/160 (62.50%), Query Frame = -2
Query:  156 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLE-KEKGIFKALEAYALANPN 632
            MG+F    E +ST+ P KL+K      D ++PKV+ + +++VE++ G+GGPG+IKK   +      +  H++DA+D+ N  YNY+ I GEG     +++ +SYESK++  PDGGS   + +KF+ K   ++  E V+   + K  G+FKA+E Y LA+P+
Sbjct:    1 MGIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE--SLEKISYESKILPGPDGGSIGKINVKFHTK--GDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 155          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: L18B_LUPLU (Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = -2
Query:  156 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 632
            MGVF    E  S +   KLFK      D ++PKV+ Q+ ++VE++ G+GGPG++KK     G    Y  H++DA+D+ +  YNY+ + G G     +++ +++ESK++  PDGGS   + +KF+ K G  + +   +    +  G+FKA+E Y LANPN
Sbjct:    1 MGVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQI-QSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDE--SLEKITFESKLLSGPDGGSIGKIKVKFHTK-GDVLSDAVREEAKARGTGLFKAVEGYVLANPN 155          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: RNS1_PANGI (Ribonuclease 1 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = -2
Query:  162 GVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGS--KSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 629
            GV    VE TST+P +KL+   +L  D +LPK  PQ +K+ E+I GDGG G++K     E   +   K R+DA+DK+   Y Y+ I   GD  +  I+ +     +V TPDGGS  K+T +  +     A I EE +K   EK   IFKA+EAY LAN
Sbjct:    1 GVQKTEVEATSTVPAQKLYAGLLLDIDDILPKAFPQAIKSSEIIEGDGGVGTVKLVTLGEASQFNTMKQRIDAIDKDALTYTYSII--GGDILLDIIESIVNHFTIVPTPDGGSIVKNTTI--YNTIGDAVIPEENIKDATEKAGLIFKAVEAYLLAN 154          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: ALL2_APIGR (Major allergen Api g 2 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 65/159 (40.88%), Postives = 94/159 (59.12%), Query Frame = -2
Query:  162 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGS--KSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 632
            MGV    VE  ST+  EK+++ F+L  DT+ PKVLPQ++K+VE++ GDGG G++K  +  E  ++   K +VD +DK    Y YT I   GD  +  ++ V  E  VV T DGG   K+T +  +  K  A + E+++K   EK    FKA+EAY LAN
Sbjct:    1 MGVQKTVVEAPSTVSAEKMYQGFLLDMDTVFPKVLPQLIKSVEILEGDGGVGTVKLVHLGEATEYTTMKQKVDVIDKAGLAYTYTTI--GGDILVDVLESVVNEFVVVPT-DGGCIVKNTTI--YNTKGDAVLPEDKIKEATEKSALAFKAVEAYLLAN 154          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: PR13_PETCR (Pathogenesis-related protein B OS=Petroselinum crispum GN=PCPR1-3 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = -2
Query:  162 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 632
            MGV    VE TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG G++K  +  +   +K  K +VDA+DK    Y+Y+ I  +GD  +  I+ ++     V   DGG      I F  K  A + EE +K   ++   IFKA+EAY +AN
Sbjct:    1 MGVQKSEVEATSSVSAEKLFKGLCLDIDTLLPRVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: PR11_PETCR (Pathogenesis-related protein A OS=Petroselinum crispum GN=PCPR1-1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 62/157 (39.49%), Postives = 88/157 (56.05%), Query Frame = -2
Query:  162 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 632
            MGV    VE TS++  EKLFK   L  DTLLP+VLP  +K+ E + GDGG G++K  +  +   +K  K +VDA+DK    Y+Y+ I  +GD  +  I+ ++     V   DGG      I F  K  A + EE +K   ++   IFKA+EAY +AN
Sbjct:    1 MGVQKSEVETTSSVSAEKLFKGLCLDIDTLLPQVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSII--DGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: ABR17_PEA (ABA-responsive protein ABR17 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 57/158 (36.08%), Postives = 92/158 (58.23%), Query Frame = -2
Query:  159 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANP 632
            MGVF  + E  ST+ P KL+K      D ++PKV+ +  + VE+I G+GGPG+IKK + +E     Y  H++DA+D+ N  YNY+ + G G     +++ V++E+ ++   DGGS   + +K++ K  A + +        K  G+ KA+E Y LANP
Sbjct:    1 MGVFVFDDEYVSTVAPPKLYKALAKDADEIVPKVIKEA-QGVEIIEGNGGPGTIKKLSILEDGKTNYVLHKLDAVDEANFGYNYSLVGGPGLHE--SLEKVAFETIILAGSDGGSIVKISVKYHTKGDAALSDAVRDETKAKGTGLIKAIEGYVLANP 155          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: PRS2_SOLTU (Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.929e-22
Identity = 61/161 (37.89%), Postives = 94/161 (58.39%), Query Frame = -2
Query:  156 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 632
            MGV +   E T+ + P +LFK  V+  D L+PK++PQV KN+E      G GSIKK NFVEG   KY KH++  +D +N +  Y+ IEG+  GD     ++ +SY+ K     +GG     + +++ K    +K+E+   G ++   +FK +EAY LANP+
Sbjct:    1 MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQV-KNIEA----EGDGSIKKMNFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGGCVCKSITEYHTKGDYVLKDEEHNEGQKQGMELFKIVEAYLLANPS 152          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: RAP_TAROF (Root allergen protein OS=Taraxacum officinale PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 58/152 (38.16%), Postives = 87/152 (57.24%), Query Frame = -2
Query:  153 EDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPNA 608
            E TS+L P  +FK FV+ FDT+ PK  P+  K+++ I GDGG G+IK   + +GV +   KH+VDA+D  N   +YT    EGD  +  I+  ++  K + + DGGS     + F  K  A++ +E V    E  K  FKA+E Y +++P A
Sbjct:    7 EITSSLSPSNIFKAFVIDFDTIAPKAEPETYKSIKTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTIF--EGDVLMGIIESGTHHLKFLPSADGGSVYKHSMVFKCKGDAKLTDENVSLMKEGLKKTFKAIETYVISHPEA 156          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: PRS1_SOLTU (Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.329e-22
Identity = 60/161 (37.27%), Postives = 93/161 (57.76%), Query Frame = -2
Query:  156 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGE--GDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALANPN 632
            MGV +  +E T+ + P +LFK  V+  D L+PK++PQV KN+E      G GSIKK  FVEG   KY KH++  +D +N +  Y+ IEG+  GD     ++ +SY+ K     +GG     + +++ K    +K+E    G ++   +FK +EAY LANP+
Sbjct:    1 MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQV-KNIEA----EGDGSIKKMTFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGD----KLESISYDLKFEAHGNGGCVCKSIAEYHTKGDYVLKDEDHNEGKKQGMELFKIVEAYLLANPS 152          
The following BLAST results are available for this feature:
BLAST of FC876815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
L18A_LUPLU1.427e-2538.13Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV... [more]
L18B_LUPLU3.515e-2436.48Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV... [more]
RNS1_PANGI1.744e-2341.14Ribonuclease 1 OS=Panax ginseng PE=1 SV=1[more]
ALL2_APIGR5.075e-2340.88Major allergen Api g 2 OS=Apium graveolens PE=1 SV... [more]
PR13_PETCR1.131e-2239.49Pathogenesis-related protein B OS=Petroselinum cri... [more]
PR11_PETCR1.131e-2239.49Pathogenesis-related protein A OS=Petroselinum cri... [more]
ABR17_PEA1.477e-2236.08ABA-responsive protein ABR17 OS=Pisum sativum PE=2... [more]
PRS2_SOLTU1.929e-2237.89Pathogenesis-related protein STH-2 OS=Solanum tube... [more]
RAP_TAROF2.519e-2238.16Root allergen protein OS=Taraxacum officinale PE=1... [more]
PRS1_SOLTU7.329e-2237.27Pathogenesis-related protein STH-21 OS=Solanum tub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC01RM1 EHR Citrus clementina cDNA clone KN0AAN1CC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876815 ID=FC876815; Name=FC876815; organism=Citrus clementina; type=EST; length=666bp
TTTTTTTTTTTATTTACCCAAAAGCCAATTATATAAATTGGCATATTTGA
AAACAAAAAGACACGACATACGGAAGCCATAAACATGATTATTCATAATG
TTGCAACAAAGGCGACCCAAGTGCGGTGAAGTGTTGACGTAAAAGCTTAT
ACGGCATTGGGGTTTGCCAAGGCATAGGCTTCCAGAGCCTTAAAAATTCC
CTTCTCCTTTTCCAAGCCTCCCTTAACCTGCTCTTCCTTAATCTCGGCAC
CTGGTTTGGGATAGAACTTGATAACAACGGTGCTCTTGCTTCCTCCGTCA
GGGGTGCCCACAACCTTACTCTCATAAGAAACATGATCAATAGTAGGGAT
GTTAGCATCACCCTCACCTTCAATTGCCGTGTAATTGTATATCTTGTTCT
CTTTGTCCAATGCATCAACCCTATGCTTAAAGTACTTCCAATCAACACCT
TCAACAAAGTTAAACTTCTTGATGCTTCCAGGGCCTCCATCCCCTGAAAT
CAATTCAACGTTCTTTACAACCTGAGGCAGGACTTTGGGCAGAAGGGTGT
CGAACTGAAGGACAAAAAGTTTGAACAACTTTTCAGGGGGGAGAGTGCTT
GTATCCTCTACATTCAACGTGAAAACACCCATGATTGTCTAAAAGTTAAA
CAAAGAAAGAAGATGA
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