FC876815

Overview
NameFC876815
Unique NameFC876815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1060 contig Ccv1_Contig1060:110..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: ALL1_APIGR (Major allergen Api g 1 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.637e-21
Identity = 61/157 (38.85%), Postives = 89/157 (56.69%), Query Frame = -2
Query:  162 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 632
            MGV T  +E TS++  EK+F+ FV+  DT+LPK  P   K+VE I GDGGPG++K     +G        R+D ++KE   ++Y+ I+G  D  +  I+ +     +V T DGGS       F+ K  A + EE +K   E+   +FKALEAY +AN
Sbjct:    1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVE-IKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDG--DILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: RNS2_PANGI (Ribonuclease 2 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.252e-20
Identity = 58/156 (37.18%), Postives = 84/156 (53.85%), Query Frame = -2
Query:  162 GVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 629
            GV     +  S +P EKLFK   L  DT++PK  P+ +K+V+++ G+GG G+IK     +   +   K R+DA+D+    Y YT I   GD  +  I+ +    K+V T DGGS  T    +     A I EE +K   +K   +FKA+EAY LAN
Sbjct:    1 GVQKTETQAISPVPAEKLFKGSFLDMDTVVPKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAIDEHAFTYTYTII--GGDILLDIIESIENHFKIVPT-DGGSTITQTTIYNTIGDAVIPEENIKDATDKSIQLFKAVEAYLLAN 153          
BLAST of FC876815 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = -2
Query:  162 MGVFTLNVEDTSTLPPEKLFKLFVLQFDTLLPKVLPQVVKNVELISGDGGPGSIKKFNFVEGVDWKYFKHRVDALDKENKIYNYTAIEGEGDANIPTIDHVSYESKVVGTPDGGSKSTVVIKFYPKPGAEIKEEQVKGGLEKEKGIFKALEAYALAN 632
            MG  + ++E TS++  EK+F   VL  DT++PK  P   K+VE + GDGG G+++     EG        R DA++KE   Y+ T I+G  D  +  I+ +     VV T DGGS +     F+ K  A + EE +K    +   +FKA+EAY +AN
Sbjct:    1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVE-VKGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVIDG--DILLGFIESIETHLVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154          
The following BLAST results are available for this feature:
BLAST of FC876815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ALL1_APIGR3.637e-2138.85Major allergen Api g 1 OS=Apium graveolens PE=1 SV... [more]
RNS2_PANGI5.252e-2037.18Ribonuclease 2 OS=Panax ginseng PE=1 SV=1[more]
DAU1_DAUCA9.905e-1936.31Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC01RM1 EHR Citrus clementina cDNA clone KN0AAN1CC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876815 ID=FC876815; Name=FC876815; organism=Citrus clementina; type=EST; length=666bp
TTTTTTTTTTTATTTACCCAAAAGCCAATTATATAAATTGGCATATTTGA
AAACAAAAAGACACGACATACGGAAGCCATAAACATGATTATTCATAATG
TTGCAACAAAGGCGACCCAAGTGCGGTGAAGTGTTGACGTAAAAGCTTAT
ACGGCATTGGGGTTTGCCAAGGCATAGGCTTCCAGAGCCTTAAAAATTCC
CTTCTCCTTTTCCAAGCCTCCCTTAACCTGCTCTTCCTTAATCTCGGCAC
CTGGTTTGGGATAGAACTTGATAACAACGGTGCTCTTGCTTCCTCCGTCA
GGGGTGCCCACAACCTTACTCTCATAAGAAACATGATCAATAGTAGGGAT
GTTAGCATCACCCTCACCTTCAATTGCCGTGTAATTGTATATCTTGTTCT
CTTTGTCCAATGCATCAACCCTATGCTTAAAGTACTTCCAATCAACACCT
TCAACAAAGTTAAACTTCTTGATGCTTCCAGGGCCTCCATCCCCTGAAAT
CAATTCAACGTTCTTTACAACCTGAGGCAGGACTTTGGGCAGAAGGGTGT
CGAACTGAAGGACAAAAAGTTTGAACAACTTTTCAGGGGGGAGAGTGCTT
GTATCCTCTACATTCAACGTGAAAACACCCATGATTGTCTAAAAGTTAAA
CAAAGAAAGAAGATGA
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