FC876819

Overview
NameFC876819
Unique NameFC876819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length603
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10385 contig Ccv1_Contig10385:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: BLH11_ARATH (BEL1-like homeodomain protein 11 OS=Arabidopsis thaliana GN=BLH11 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.562e-30
Identity = 64/144 (44.44%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   11 SALASKAMSRHFKCLRDGIVGQIQATKKAMGEKDPVAPGTSIGETPRLKIIDQALRQQRAFQQMSMMES---HPWRPQRGLPERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV*EMYLEQ 433
            + LA +AM+RHF  L + I+ Q+ + ++         P        +L + D       + Q++ +++    H W+P RGLPE SV++LRAWLF+HFLHPYP++ +K +LA QTGLS++QVSNWFINA VRLW PM+ EMY E+
Sbjct:  130 TGLALQAMTRHFGSLEEAIISQLNSVRRRFIISHQDVPKIISSGLSQLSLFDGNTTSS-SLQRLGLVQGPQRHAWKPIRGLPETSVAILRAWLFQHFLHPYPNEAEKLVLASQTGLSKNQVSNWFINARVRLWKPMIEEMYREE 272          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: BLH8_ARATH (BEL1-like homeodomain protein 8 OS=Arabidopsis thaliana GN=BLH8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.768e-29
Identity = 78/181 (43.09%), Postives = 104/181 (57.46%), Query Frame = 2
Query:   14 ALASKAMSRHFKCLRDGIVGQIQATKKAMGEKDPVAPGTSIGETPRLKIIDQALRQQRAFQQMSM----MESHPWRPQRGLPERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV*EMYLEQTKEQDNNMASSYCATDLDDNSGRPDRTQNPPADQKPT 544
            +LA K  SR FK LR  I   ++           ++  +S G        ++  ++QR+    ++     + H WRPQRGLPER+V+VLRAWLF HFLHPYP+D DK +LA QTGLSR+QVSNWFINA VRLW PMV E++  +TK   N   S        + S RP+   +P  +Q  T
Sbjct:  366 SLALKRTSRSFKALRTAIAEHVKQ----------ISSHSSNGNNN-----NRFQKRQRSLIGNNVGFESQQQHIWRPQRGLPERAVAVLRAWLFDHFLHPYPTDSDKQMLATQTGLSRNQVSNWFINARVRLWKPMVEEIHTLETKAIKNADTSHNI-----EPSNRPNTVSSPSHEQTLT 526          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: ATH1_ARATH (Homeobox protein ATH1 OS=Arabidopsis thaliana GN=ATH1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.334e-28
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  179 QQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV*EMYLEQTKEQDNN 454
            Q    QQ+       WRPQRGLPE+SVSVLR W+F++FLHPYP D +KH+LA ++GL+RSQVSNWFINA VRLW PM+ EMY E  K + NN
Sbjct:  358 QHCLLQQLKRKNHQIWRPQRGLPEKSVSVLRNWMFQNFLHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKLNN 449          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: PKNX2_MOUSE (Homeobox protein PKNOX2 OS=Mus musculus GN=Pknox2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  113 PVAPGTSIGETPRLKIIDQALRQQRAFQQMSMM-----ESHPWRPQRG-LPERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            PV   TS G+     I   A++ Q     + +      E    + +RG LP+ + +++R+WLF+H +HPYP++ +K  +A QT L+  QV+NWFINA  R+  PM+
Sbjct:  246 PVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLTSLLDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPML 351          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: PKNX2_HUMAN (Homeobox protein PKNOX2 OS=Homo sapiens GN=PKNOX2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 38/106 (35.85%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  113 PVAPGTSIGETPRLKIIDQALRQQRAFQQMSMM-----ESHPWRPQRG-LPERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            PV   TS G+     I   A++ Q     + +      E    + +RG LP+ + +++R+WLF+H +HPYP++ +K  +A QT L+  QV+NWFINA  R+  PM+
Sbjct:  246 PVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLTSLLDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPML 351          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: PKNX2_PONAB (Homeobox protein PKNOX2 OS=Pongo abelii GN=PKNOX2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  113 PVAPGTSIGETPRLKIIDQALRQQRAFQQMSMM-----ESHPWRPQRG-LPERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            PV   TS G+     I   A++ Q     + +      E    + +RG LP+ + +++R+WLF+H +HPYP++ +K  +A QT L+  QV+NWF+NA  R+  PM+
Sbjct:  246 PVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLTSLLDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFVNARRRILQPML 351          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: PKNX1_MOUSE (Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 46/149 (30.87%), Postives = 72/149 (48.32%), Query Frame = 2
Query:  143 TPRLKIIDQAL-----RQQRAFQQMSM--------MESHPWRPQRG-LPERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV*EMYLEQTKEQDNNMASSYCATDLDDNSGRPDRTQNPPADQKPTQ 547
            TP+ +++ QAL     R Q +  Q+ +         E    + +RG LP+ + +V+R+WLF+H  HPYP++ +K  +A QT L+  QV+NWFINA  R+  PM                        LD +     +T+  PA  +P Q
Sbjct:  219 TPQGQVVTQALSPGTIRIQNSQLQLQLNQDLSTLHQEDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPM------------------------LDSSCSETPKTKKKPAQNRPVQ 343          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: HTH_DROME (Homeobox protein homothorax OS=Drosophila melanogaster GN=hth PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + ++LRAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  368 KRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 428          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS2_MOUSE (Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  279 KRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 339          
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS2_HUMAN (Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  279 KRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 339          
The following BLAST results are available for this feature:
BLAST of FC876819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
BLH11_ARATH3.562e-3044.44BEL1-like homeodomain protein 11 OS=Arabidopsis th... [more]
BLH8_ARATH1.768e-2943.09BEL1-like homeodomain protein 8 OS=Arabidopsis tha... [more]
ATH1_ARATH3.334e-2861.96Homeobox protein ATH1 OS=Arabidopsis thaliana GN=A... [more]
PKNX2_MOUSE1.273e-1135.85Homeobox protein PKNOX2 OS=Mus musculus GN=Pknox2 ... [more]
PKNX2_HUMAN1.273e-1135.85Homeobox protein PKNOX2 OS=Homo sapiens GN=PKNOX2 ... [more]
PKNX2_PONAB1.662e-1134.91Homeobox protein PKNOX2 OS=Pongo abelii GN=PKNOX2 ... [more]
PKNX1_MOUSE2.171e-1130.87Homeobox protein PKNOX1 OS=Mus musculus GN=Pknox1 ... [more]
HTH_DROME2.171e-1152.46Homeobox protein homothorax OS=Drosophila melanoga... [more]
MEIS2_MOUSE2.836e-1150.82Homeobox protein Meis2 OS=Mus musculus GN=Meis2 PE... [more]
MEIS2_HUMAN2.836e-1150.82Homeobox protein Meis2 OS=Homo sapiens GN=MEIS2 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC07RM1 EHR Citrus clementina cDNA clone KN0AAN1CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876819 ID=FC876819; Name=FC876819; organism=Citrus clementina; type=EST; length=603bp
GCACGAGGATTCAGCTTTGGCTTCCAAGGCCATGTCAAGGCATTTTAAAT
GTTTAAGAGATGGGATTGTTGGTCAAATTCAGGCTACAAAGAAAGCCATG
GGCGAGAAAGATCCCGTTGCACCGGGCACAAGCATAGGCGAAACACCAAG
ACTGAAAATCATTGATCAAGCCTTGAGACAACAACGAGCTTTTCAGCAGA
TGAGCATGATGGAGAGTCACCCGTGGAGACCTCAAAGGGGCCTGCCTGAA
AGATCCGTATCCGTGCTTCGTGCTTGGTTGTTCAAACATTTTCTTCATCC
GTACCCAAGCGATGTTGATAAACATATCTTAGCCCGCCAAACTGGCCTTT
CGAGAAGCCAGGTGTCCAATTGGTTCATTAATGCGATAGTGAGGCTATGG
AACCCCATGGTGTAAGAAATGTACTTAGAACAGACAAAGGAGCAAGACAA
CAACATGGCATCTTCCTACTGTGCTACTGATCTTGATGACAATAGTGGCC
GGCCAGATCGGACTCAAAATCCTCCTGCTGATCAAAAACCCACACAGTAT
CAACTTGTACTAAATGACTCTGAATGTCTGTCTTCCATTATCACTAATCA
TGA
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