FC876819

Overview
NameFC876819
Unique NameFC876819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length603
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10385 contig Ccv1_Contig10385:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS1_MOUSE (Homeobox protein Meis1 OS=Mus musculus GN=Meis1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  275 KRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 335
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS1_HUMAN (Homeobox protein Meis1 OS=Homo sapiens GN=MEIS1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  275 KRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 335
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS3_XENTR (Homeobox protein meis3 OS=Xenopus tropicalis GN=meis3 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  270 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 330
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS3_MOUSE (Homeobox protein Meis3 OS=Mus musculus GN=Meis3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  268 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 328
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS3_HUMAN (Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  265 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 325
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEIS1_XENLA (Homeobox protein Meis1 OS=Xenopus laevis GN=meis1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:  236 RGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  276 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 335
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEI3B_XENLA (Homeobox protein meis3-B OS=Xenopus laevis GN=meis3-B PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  270 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 330
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: MEI3A_XENLA (Homeobox protein meis3-A OS=Xenopus laevis GN=meis3-A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  270 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 330
[Close]
BLAST of FC876819 vs. ExPASy Swiss-Prot
Match: ME3L1_HUMAN (Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1 PE=5 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:  233 QRGL-PERSVSVLRAWLFKHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAIVRLWNPMV 412
            +RG+ P+ + +++RAWLF+H  HPYPS+  K  LA+ TGL+  QV+NWFINA  R+  PM+
Sbjct:  164 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 224
The following BLAST results are available for this feature:
BLAST of FC876819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
MEIS1_MOUSE2.836e-1150.82Homeobox protein Meis1 OS=Mus musculus GN=Meis1 PE... [more]
MEIS1_HUMAN2.836e-1150.82Homeobox protein Meis1 OS=Homo sapiens GN=MEIS1 PE... [more]
MEIS3_XENTR3.703e-1150.82Homeobox protein meis3 OS=Xenopus tropicalis GN=me... [more]
MEIS3_MOUSE3.703e-1150.82Homeobox protein Meis3 OS=Mus musculus GN=Meis3 PE... [more]
MEIS3_HUMAN3.703e-1150.82Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE... [more]
MEIS1_XENLA3.703e-1151.67Homeobox protein Meis1 OS=Xenopus laevis GN=meis1 ... [more]
MEI3B_XENLA3.703e-1150.82Homeobox protein meis3-B OS=Xenopus laevis GN=meis... [more]
MEI3A_XENLA3.703e-1150.82Homeobox protein meis3-A OS=Xenopus laevis GN=meis... [more]
ME3L1_HUMAN3.703e-1150.82Putative homeobox protein Meis3-like 1 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC07RM1 EHR Citrus clementina cDNA clone KN0AAN1CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876819 ID=FC876819; Name=FC876819; organism=Citrus clementina; type=EST; length=603bp
GCACGAGGATTCAGCTTTGGCTTCCAAGGCCATGTCAAGGCATTTTAAAT
GTTTAAGAGATGGGATTGTTGGTCAAATTCAGGCTACAAAGAAAGCCATG
GGCGAGAAAGATCCCGTTGCACCGGGCACAAGCATAGGCGAAACACCAAG
ACTGAAAATCATTGATCAAGCCTTGAGACAACAACGAGCTTTTCAGCAGA
TGAGCATGATGGAGAGTCACCCGTGGAGACCTCAAAGGGGCCTGCCTGAA
AGATCCGTATCCGTGCTTCGTGCTTGGTTGTTCAAACATTTTCTTCATCC
GTACCCAAGCGATGTTGATAAACATATCTTAGCCCGCCAAACTGGCCTTT
CGAGAAGCCAGGTGTCCAATTGGTTCATTAATGCGATAGTGAGGCTATGG
AACCCCATGGTGTAAGAAATGTACTTAGAACAGACAAAGGAGCAAGACAA
CAACATGGCATCTTCCTACTGTGCTACTGATCTTGATGACAATAGTGGCC
GGCCAGATCGGACTCAAAATCCTCCTGCTGATCAAAAACCCACACAGTAT
CAACTTGTACTAAATGACTCTGAATGTCTGTCTTCCATTATCACTAATCA
TGA
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