FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_THENV (3-isopropylmalate dehydratase large subunit OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.097e-26
Identity = 73/201 (36.32%), Postives = 107/201 (53.23%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            E T  YL+ +  + Y+P  S E   ++  Y  ++ +LEPLVA P+S DN   ARE + V++D+V+IGSCT G+  DF  AA+V      + K     +PA+  V+     L            +  +AGC      TCG CLGG    +       V V+T+NRNF G +GH +  +YLA+P TAA +AL   + DP+ +L
Sbjct:  228 EVTADYLQRERGVSYKPP-SLEPGRYVDRYEVELQRLEPLVAAPYSVDNVKAAREVEGVEVDQVFIGSCTNGRLSDFEVAARVLKRG--RAKARCIAIPASYAVFRRAMELGY--------IDVLTKAGC-VVTYGTCGPCLGG---HFGVAGPGEVVVTTSNRNFKGRVGHPDSKVYLANPATAAAAALEGKIVDPRPYL 413          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ARCB4 (3-isopropylmalate dehydratase large subunit OS=Arcobacter butzleri (strain RM4018) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.097e-26
Identity = 69/182 (37.91%), Postives = 101/182 (55.49%), Query Frame = 2
Query:   59 YSDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            YSDE A++      D++KLEP++A P+ P N  ++++   D +K+D+V+IGSCT G+  DF  AA++         V   L P TQK+  +   L               +AG    ++PTCGACLGG       + +  VC+STTNRNF G MG +   IYLA+   AA SA++ Y+ DP+
Sbjct:  255 YSDEDANYCQVIEIDVAKLEPVIAYPYLPSNGHSVSQAVSDNIKVDQVFIGSCTNGRLSDFKIAAEILAGQKVARHVRLILTPGTQKILREATKLGY--------IDTLVDAGA-VVSNPTCGACLGGYMGI---LGDNEVCISTTNRNFVGRMGSRSSKIYLANSAVAAASAISGYITDPR 424          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SULSY (3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 71/199 (35.68%), Postives = 102/199 (51.26%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  ++  +T+  ++   SD  A +  EY FD SK+EP+VA P  P N     E     ID+V+IGSCT G+  D   AA +  +     +V   ++PA+ +++             +   +I  +AGC    S TCG CLGG     A   E  VC+ST+NRNF G MGH +  +YL+SP  AA SA+   +  P E
Sbjct:  232 EKTVDWVRKRTNREFKLYKSDPDAKYCCEYEFDASKIEPVVACPSLPSNVKPVSEVAGTHIDQVFIGSCTNGRLSDLRIAAAILKSKKVHPEVRCIVIPASDQIYKQAL--------HEGIIEILADAGCLISTS-TCGPCLGGHMGILA---EGEVCLSTSNRNFVGRMGHPKSQVYLSSPAVAAASAVLGRIAHPDE 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CAMFF (3-isopropylmalate dehydratase large subunit OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.432e-26
Identity = 81/204 (39.71%), Postives = 111/204 (54.41%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            + T ++LE K +L  +P   YSDE A++    R D+SKL+P++A P  P N     E    D+KID+V+IGSCT G+  D   AA++    GK+V   T L+  PATQK+ +            +    IF EAG    ++PTCGACLGG             CVSTTNRNF G MG +   +YLA+   AA SA+   + DP+
Sbjct:  231 DITKEFLESK-NLRSKPKFHYSDEGANYEQVLRIDVSKLDPVIAYPFLPSNGKSINEALKDDLKIDQVFIGSCTNGRLSDLRIAARIL--KGKRVAKHTRLIITPATQKIALAAQK--------EGLMDIFVEAGA-VVSNPTCGACLGGYMGILGAGER---CVSTTNRNFVGRMGDRTSEVYLANSAVAAASAIAGKIADPR 419          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PYRIL (3-isopropylmalate dehydratase large subunit OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 73/199 (36.68%), Postives = 107/199 (53.77%), Query Frame = 2
Query:   11 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            T  YL+ +  + Y+P    +   ++ +Y  ++SKLEPLVA P+S DN    RE + V++D+V+IGSCT G+  DF  AA++      +VK     +PA+  ++     L            I  +AGC      TCG CLGG    +       V VST+NRNF G MGH +  +YLA+P TAA +AL   + DP+ +L
Sbjct:  230 TVDYLQRERGVSYKPP-DLQPGRYVDKYVVELSKLEPLVAAPYSVDNVKAVREVEGVEVDQVFIGSCTNGRLSDFEIAARILRRG--RVKSRCIAIPASYTIFRKALELGY--------IDILTKAGC-VVTYGTCGPCLGG---HFGVAGPGEVVVSTSNRNFKGRMGHPDSKVYLANPATAAAAALEGKIVDPRPYL 413          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_NITSB (3-isopropylmalate dehydratase large subunit OS=Nitratiruptor sp. (strain SB155-2) GN=leuC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.871e-26
Identity = 82/205 (40.00%), Postives = 111/205 (54.15%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECK-DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  +L DK  L  EP   YSDE A +      D++ LEP++A PH P N R ++   K D+K+D+V+IGSCT G+  D   AA++    G+KV   T ++  PATQK+  +           +    I  +AG    ++PTCGACLGG     A       CVSTTNRNF G MG +   IYLA+   AA SA+   + DP+E
Sbjct:  231 EVTKAFLADKP-LAREPKIHYSDEDAEYEQVIEIDVNNLEPVIAFPHLPSNGRPISEAAKMDLKVDQVFIGSCTNGRLSDIAIAAEIL--KGRKVARHTRMIVTPATQKILKEAEK--------RGYIDILIDAGA-VVSNPTCGACLGGYMGILADNER---CVSTTNRNFVGRMGARTSEIYLANSAVAAASAVAGKIADPRE 420          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_METS5 (3-isopropylmalate dehydratase large subunit OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=leuC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.443e-26
Identity = 73/197 (37.06%), Postives = 101/197 (51.27%), Query Frame = 2
Query:   11 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            T  Y++       E V  D  A +L E+  ++ KLEPLVA P+S DN   ARE   V +D+VYIGSCT G+  DF  A+++    GKKVK     +P++  ++     +           +    AGC      TCG CLGG    +       V VST++RNF G MG  E  +YL+ P  AA SA T Y+ DP++
Sbjct:  231 TKDYIKTMRGKEVELVTPDPGAKYLDEHTIELDKLEPLVAAPYSVDNVKTAREESKVPVDQVYIGSCTNGRLSDFRIASEIL--KGKKVKTRCIAIPSSYTMFKQAMEMGY--------IEDLVNAGC-VVTYGTCGPCLGG---HFGVAGPGEVIVSTSSRNFRGRMGSNEAKVYLSGPSVAAASAATGYITDPRD 413          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SULSO (3-isopropylmalate dehydratase large subunit OS=Sulfolobus solfataricus GN=leuC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.191e-26
Identity = 71/198 (35.86%), Postives = 102/198 (51.52%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            + T +Y+++      E V  D  A ++ EY   + ++EPLVA PHS DN  +  E +   +D+VYIGSCT G+  DF  AAK+    GKKVK     +PA+ +++ +           +   Q   +AGC      TCG CLGG    +         VST++RNF G MG  E  +YL+ P  AA SAL   + DP+
Sbjct:  231 QETKRYIKEMRGYEPELVTPDNGAKYVDEYTIQLDEMEPLVAAPHSVDNVKVVNELEGTPVDQVYIGSCTNGRLSDFEIAAKIM--KGKKVKSRCIAIPASYRMFKEALE--------RGYIQTLVDAGCIVTYG-TCGPCLGG---HFGIAGPGENIVSTSSRNFKGRMGSNEAKVYLSGPAVAAISALEGKITDPR 414          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_CLOD6 (3-isopropylmalate dehydratase large subunit OS=Clostridium difficile (strain 630) GN=leuC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.191e-26
Identity = 75/185 (40.54%), Postives = 99/185 (53.51%), Query Frame = 2
Query:   62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC-KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            +DE A +   Y  D++KL+  VA PH P+N     E  KD+KID+V IGSCT G+  D    A++    GKKV   V   + P TQKV+++           K     F EAG    ++PTCG CLGG     A   +    +STTNRNF G MGH +  +YLASP  AA SA+T  +  P E +
Sbjct:  255 ADEDAVYDEVYEIDLAKLKETVAFPHLPENTRTVDEIDKDIKIDQVVIGSCTNGRISDLEVVAEIM--KGKKVADGVRVMIFPGTQKVYLEAIE--------KGYITTFIEAGAAV-STPTCGPCLGGHMGILAAGEKS---ISTTNRNFVGRMGHVDSEVYLASPAVAAASAITGKISKPSEII 425          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ELUMP (3-isopropylmalate dehydratase large subunit OS=Elusimicrobium minutum (strain Pei191) GN=leuC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 67/187 (35.83%), Postives = 102/187 (54.55%), Query Frame = 2
Query:   47 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            ++ + +DE A +    + D S LEP V+ PH+ DN     E KD+K+++V+IG+CT G+ ED   AA++           TF+ PA++ V +            +   +IF +AG     +P CG C+G        + +  VC++T NRNF G MG+ +G IYL+SP  AA SAL  Y+ DP+E L
Sbjct:  243 FKLISADEGADYEKVIKIDASSLEPTVSCPHTVDNTKTVGELKDIKVNQVFIGTCTNGRIEDLRIAAEILKDKKVNPGTRTFITPASRDVMLAALK--------EGLIEIFVKAGASV-QTPGCGPCVGVHGGI---LGDGEVCLATQNRNFQGRMGNTKGFIYLSSPAVAAYSALKGYISDPREIL 417          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC_THENV1.097e-2636.323-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_ARCB41.097e-2637.913-isopropylmalate dehydratase large subunit OS=Arc... [more]
LEUC_SULSY1.432e-2635.683-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_CAMFF1.432e-2639.713-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_PYRIL1.871e-2636.683-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_NITSB1.871e-2640.003-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC_METS52.443e-2637.063-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_SULSO3.191e-2635.863-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_CLOD63.191e-2640.543-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_ELUMP5.442e-2635.833-isopropylmalate dehydratase large subunit OS=Elu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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