FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESVH (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=leuC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.482e-23
Identity = 70/180 (38.89%), Postives = 92/180 (51.11%), Query Frame = 2
Query:   62 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595
            +D  A +  E  FD++ + P+VA PH PDN     E KDV + +V IGSCT G+  D   AA V    G+KV   V   ++PAT  +W             +   + F EAGC      TCG CLGG     A   +    ++TTNRNF G MG  E  +YL+ P TAA SA+T  + DP
Sbjct:  251 ADAGAVYERELSFDVTGMTPVVACPHLPDNVKPVSEVKDVTVQQVVIGSCTNGRIGDLREAAAVL--RGRKVSRDVRCIVLPATPGIWRQALR--------EGLIETFMEAGC-IVGPATCGPCLGGHMGILA---DGERAIATTNRNFKGRMGSLESEVYLSGPATAAASAVTGVITDP 416          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SULDN (3-isopropylmalate dehydratase large subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=leuC PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.936e-23
Identity = 72/202 (35.64%), Postives = 105/202 (51.98%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            E T  +L DK +L  EP   YSD  AS++     D++ L+P++A P  P N  ++ +  KD +KID+ +IGSCT G+  D   AA++         V   + P TQ +  +   L            I  +AG    ++PTCGACLGG       + +  V +STTNRNF G MG +   +YLA+   AA SA+  Y+ DP+
Sbjct:  231 ETTKAFLADK-NLAREPRIHYSDADASYVQILNIDVASLDPVIAYPFLPSNGHSVVQAQKDNIKIDQAFIGSCTNGRLSDLKVAAEILKGKRVHPDVRLIVTPGTQMILREANKLGY--------IDIIVDAG-GVVSNPTCGACLGGYMGI---LGDNEVAISTTNRNFVGRMGSRSSKVYLANSAVAAISAIKGYITDPR 419          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_NAUPA (3-isopropylmalate dehydratase large subunit OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=leuC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.528e-23
Identity = 74/205 (36.10%), Postives = 111/205 (54.15%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            EA  + ++    L  EP   YSD  A++      D++KLEPLVA P  P N + +++  KD ++ID+VYIGSCT G   D   AA++    GK+V  +V   + PATQ+++          +  +    I  +AG    A+PTCGACLGG       + +    V+TTNRNF G MG +   +YL++   AA SA+   + DP++
Sbjct:  234 EAFLEEVKKYNPLRSEPKIHYSDPDANYSQVIEIDVNKLEPLVAYPFLPSNGKPISQAVKDDIEIDQVYIGSCTNGTLSDLRIAAEIL--KGKRVHRRVRLIVTPATQRIYKQ--------AEHEGILDILIDAGA-VVANPTCGACLGG---YMGILGDGERAVATTNRNFRGRMGSRSSEVYLSNSAVAAASAIAGKIADPRD 424          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_THEMA (3-isopropylmalate dehydratase large subunit 1 OS=Thermotoga maritima GN=leuC1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.302e-23
Identity = 68/189 (35.98%), Postives = 99/189 (52.38%), Query Frame = 2
Query:   47 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN--RALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            +  + +D  A + +E   D + LEPLV+ PH  DN  +    E + +KID+V+IG+CT G+ +D   A K+    GK   V   + PA++KV+MD           K   + F E G      P CG C+G        + +    +ST NRNF G MG+    IYLASP TAA +A+T Y+ DP+ F+
Sbjct:  242 FRELKADPDAVYETEIEIDATTLEPLVSLPHYVDNVRKVSEVEKEKIKIDQVFIGTCTNGRLQDLEIALKILEKHGKHPDVRLIVGPASRKVYMDALE--------KGIIKKFVELGAAV-IPPGCGPCVGIHMGV---LGDGERVLSTQNRNFKGRMGNPNAEIYLASPATAAATAVTGYITDPRRFI 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_HELHP (3-isopropylmalate dehydratase large subunit OS=Helicobacter hepaticus GN=leuC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.312e-23
Identity = 63/199 (31.66%), Postives = 98/199 (49.25%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            + T  Y + +T   +    +D  A +   +  D+  +   VA PH P+N     +  ++KID+V IGSCT G+  D   AA++             ++PATQ ++++           +   + F +AG    ++PTCG CLGG     A   +   CVSTTNRNF G MGH    +YL+SP  AA SA+   +  P++
Sbjct:  232 DITISYAKGRTKRDFRIYKADVDAEYEQVFDIDLDSINHTVAFPHLPENTKEKDDWGEIKIDQVVIGSCTNGRLSDMAVAAEILKDKTIAKNTRCIIIPATQNIYLECI--------NRGYLETFIKAGA-VVSTPTCGPCLGGHMGILAANEK---CVSTTNRNFVGRMGHITSEVYLSSPEVAAASAVRGILSAPQD 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_METB6 (3-isopropylmalate dehydratase large subunit OS=Methanoregula boonei (strain 6A8) GN=leuC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 64/199 (32.16%), Postives = 105/199 (52.76%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            + T++Y++ +  +    + SD+ A F  +  ++++ LEP VA PH+ D      + +   ID+V+IGSCT G+ ED + AA+V        KV   ++PA++  ++      +         + F  AG    A P CG C+GG   ++  +    V ++T+NRNF G  G  EG +YL SP TAA SA+   + DP+E
Sbjct:  229 KVTWEYMKGRRKITPFALASDDDAKFAEKRTYNVADLEPQVAVPHNVDQGIPVGKVEGTHIDQVFIGSCTNGRYEDLVEAAEVLGKKKFDPKVRVLVIPASRDEYLKALEAGL--------VERFVRAGALVEA-PCCGPCMGG---SFGLIAAGEVSLATSNRNFRGRQGSTEGKVYLCSPATAAASAIKGEITDPRE 415          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESAA (3-isopropylmalate dehydratase large subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=leuC PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 68/193 (35.23%), Postives = 94/193 (48.70%), Query Frame = 2
Query:   50 EPVY--SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPAS-------PTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            +PV+  SD  A +     +D++ LEP VA PH P+N     +  +V I +V IGSCT G+ ED  +AA++   +     V   ++PAT +++                 Q  EE   DT  S       PTCG CLGG     A        V+TTNRNF G MGH E  +YLA+P  AA SA+   +  P +
Sbjct:  245 KPVFYASDPDAKYAKVIEYDVTDLEPQVAFPHLPENTRPISQVGEVPIHQVIIGSCTNGRIEDMRSAARILTGNKADKNVRLIIIPATPQIY----------------RQAMEEGLFDTFLSAGAVISPPTCGPCLGGHMGILAAGER---AVATTNRNFVGRMGHVESEVYLANPAVAAASAIAGKIAGPDD 418          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PICTO (3-isopropylmalate dehydratase large subunit OS=Picrophilus torridus GN=leuC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.255e-22
Identity = 71/199 (35.68%), Postives = 99/199 (49.75%), Query Frame = 2
Query:    5 EATFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  Y+ +KT+  Y+    DE A +      D S++EP VA P+SPDN     +  + +ID+ YIGSCT G+ ED   AA +         V   +VPA+Q+V+             +    I  +AG    A  TCGACLGG       +     C+STTNRNF G MG +   +YLA+P   A SA+   +  P+E
Sbjct:  227 EKTLDYIRNKTN-DYKIYKDDENAEYSRIIDIDASEIEPSVAIPNSPDNVRPVSKVSE-RIDQAYIGSCTNGRIEDIRRAALILKDKKIDKNVRLMVVPASQEVYNQALK--------EGLVDIITDAG-GYFAGTTCGACLGGYMGV---LGPGETCISTTNRNFIGRMGDRTSRVYLANPEVVAASAIMGRIASPEE 411          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC1_ARCFU (3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus GN=leuC1 PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.795e-22
Identity = 69/201 (34.33%), Postives = 101/201 (50.25%), Query Frame = 2
Query:   29 DKTSLPY----------EPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            DKT+L Y          E + SDE A F  E   D++ +EP VA PH  DN     E +  ++D+V+IGSCT G+ ED   AA++         V   ++PA+ + +             +   +IF +AG    A P CG C+GG   ++  +    V VST+NRNF G  G  EG IYL +P  AA +A+   + DP++
Sbjct:  229 DKTTLEYLKAMGRPYEGELLKSDEDAEF-QEVELDVTGMEPQVAAPHRVDNVVGISEVEGTRVDQVFIGSCTNGRYEDLKIAAEILKGEKVASNVRLIVIPASHREYRRALK--------EGLIEIFVDAGALVEA-PCCGPCMGG---SFGLIASGEVSVSTSNRNFIGRQGSPEGKIYLVNPAVAAATAIYGEITDPRK 416          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_METAC (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.133e-22
Identity = 68/201 (33.83%), Postives = 103/201 (51.24%), Query Frame = 2
Query:    5 EATFKYLEDKT-SLPYEPVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            E T  YL+++      +P + SDE+A +L    +D+S LEP VA PH+ DN     E +  K+D+V++GSCT G+ ED    A +         V   +VPA++  +M +              +    AG    A P CG C+GG   ++  +    V ++T+NRNF G  G  E  +YL+SP TA  SALT  + DP++
Sbjct:  231 EVTEAYLQERIPGYKLDPYWKSDEEAKYLDIRHYDVSDLEPQVACPHNVDNVKSVSEVEGTKLDQVFMGSCTNGRFEDIKIMADIMGDEPVAKGVRLLVVPASKTEYMKLLKAGY--------VEKLMNAGAIVEA-PCCGPCMGG---SFGLLGPGEVGLATSNRNFKGREGSAESFVYLSSPATAGASALTGEITDPRK 419          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC_DESVH1.482e-2338.893-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_SULDN1.936e-2335.643-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_NAUPA2.528e-2336.103-isopropylmalate dehydratase large subunit OS=Nau... [more]
LEUC1_THEMA3.302e-2335.983-isopropylmalate dehydratase large subunit 1 OS=T... [more]
LEUC_HELHP4.312e-2331.663-isopropylmalate dehydratase large subunit OS=Hel... [more]
LEUC_METB67.356e-2332.163-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_DESAA7.356e-2335.233-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_PICTO1.255e-2235.683-isopropylmalate dehydratase large subunit OS=Pic... [more]
LEUC1_ARCFU2.795e-2234.333-isopropylmalate dehydratase large subunit 1 OS=A... [more]
LEUC2_METAC8.133e-2233.833-isopropylmalate dehydratase large subunit 2 OS=M... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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