FC876820
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESOH (3-isopropylmalate dehydratase large subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=leuC PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19 Identity = 74/187 (39.57%), Postives = 92/187 (49.20%), Query Frame = 2 Query: 47 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598 ++ + SD A + DIS L P V + PD E + ID+VYIGSCT G+ ED AAKV GKKV V + PAT V+ + F AG C T +PTCGACLG A VC+STTNRNF G MG K G ++LASP TAA A+ + + K Sbjct: 254 FKKLVSDPDADYDRVLEMDISDLSPRVTYGYKPDCVKPVAEMEGTPIDQVYIGSCTNGRLEDLRVAAKVL--KGKKVHPSVRGIVSPATPTVFQAALE--------EGLIATFMAAGFCVT--NPTCGACLGMSNGVLA---PGEVCLSTTNRNFNGRMG-KGGMVHLASPATAAAGAIAGCITNSK 424
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_MYCS2 (3-isopropylmalate dehydratase large subunit OS=Mycobacterium smegmatis GN=leuC PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19 Identity = 63/202 (31.19%), Postives = 99/202 (49.01%), Query Frame = 2 Query: 17 KYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALA-RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLG------GPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 ++ +D YEP ++D A++ + D+S L P VA+P + ++ E + KID+ +IGSC G+ +D AA++ V + PA+Q+V+ D L Q +AG S TCGAC G GP + VC++++ RNF G MG E IY+ASP T A SA+ ++ D ++ Sbjct: 229 EHFDDLGITSYEPAHADPDAAYAAVREIDLSALAPYVARPGTVSRNGVSVDEVEPRKIDQAFIGSCANGQLDDLRIAAEILRGRRVAPGVRLIVTPASQQVYRDAMRLGY--------LQDIADAGAVITNS-TCGACFGYHMGVVGPGE---------VCLTSSTRNFTGRMGSTEAEIYMASPATVAASAVAGHITDARK 412
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_METTH (3-isopropylmalate dehydratase large subunit 2 OS=Methanobacterium thermoautotrophicum GN=leuC2 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 61/197 (30.96%), Postives = 92/197 (46.70%), Query Frame = 2 Query: 11 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601 T Y+ +T + SDE + +L ++ FD+S LEP VA P DN + ID ++GSCT G+ ED AA+V V + PA++++++ + + F AG +P CG CLG A V ++TTNRNF G MG +YLA+P A SA+ + P++ Sbjct: 238 TLDYVRARTGREFRVYSSDEDSQYLEDHHFDVSDLEPQVACPDDVDNVYPVHRVEGTHIDEAFLGSCTNGRYEDLKIAAEVIGDRRVHEDVRFIVSPASREIYLKALEDGI--------IETFIRAGA-IVCNPGCGPCLGAHMGVLA---PGEVSIATTNRNFRGRMGDPASSVYLANPAVVAESAIEGVISAPQQ 422
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_HERA2 (3-isopropylmalate dehydratase large subunit OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=leuC PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.416e-19 Identity = 65/178 (36.52%), Postives = 86/178 (48.31%), Query Frame = 2 Query: 74 ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 AS+ D+S LEP V+ PH DN + V +D VY+G+CT G ED AAA + V +VPA+ + +L S G + + A T +P CGAC+G A VCV T NRNF G MG +IYLASP AA +A+T Y+ P+ L Sbjct: 247 ASYSRVVECDLSTLEPQVSVPHYVDNVVDLADVGRVAVDVVYLGTCTNGHYEDMAAAASILKGRRLAPNVRMIVVPASSE------SLHRAASDGTLATLL---AAGATIGTPGCGACIGRHMGVLA---PDEVCVFTGNRNFRGRMGSPGANIYLASPEVAAATAVTGYITHPRNVL 412
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_METKA (3-isopropylmalate dehydratase large subunit 2 OS=Methanopyrus kandleri GN=leuC2 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17 Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 2 Query: 101 DISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLA-SGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 D S++EP+V+ PH D+ + + V++ RV++GSCT G+ D ++ G V +VPA+++V L G T I A P CG CLG + + + VCVST NRNFPG MG + IYLASP TAA +A + DP++ L Sbjct: 244 DASEVEPVVSVPHRVDDVRPVGDVQGVEVTRVFVGSCTNGRYRDVRVFTEILEELDGPHPDVRIVVVPASRRV------LERMTEAGLTLKLIRMGVMI---APPGCGPCLG---EHLGVLGDDDVCVSTANRNFPGRMGSRRAEIYLASPVTAAVAAAEGELVDPQDVL 401
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_OCHA4 (3-isopropylmalate dehydratase large subunit OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=leuC PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-16 Identity = 77/244 (31.56%), Postives = 109/244 (44.67%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E TF Y++DK P ++ ++SDE A F D +K+ P+V+ SP++ RAL + D+KIDRV+IGSCT G+ ED AA+ +A+GKKV V +VP + V + + +IF EAG D P C CL D R+ C ST+NRNF G G K G +L SP AA +A+ + D +E+ Sbjct: 240 ETTFAYVQDKPRAPKGEALEQAISYWKTLHSDEGAHFDKIVELDAAKISPVVSWGSSPEDVVFVTDIVPNPDEIKDETKRASKWRALDYMGLKPGTKMTDIKIDRVFIGSCTNGRIEDLRDAAR--MAAGKKVAAGVNAMIVPGSGLVKEQ--------AEAEGLDKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_MESSB (3-isopropylmalate dehydratase large subunit OS=Mesorhizobium sp. (strain BNC1) GN=leuC PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16 Identity = 73/244 (29.92%), Postives = 108/244 (44.26%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E T+ Y++D+ P +E +++DE A F + D + L P+V SP++ RAL + D+ +DRV+IGSCT G+ ED AAAK+ A G+KV ++ +VP + V + + +IF EAG D P C CL D R+ C ST+NRNF G G K G +L SP AA +A+ + D +E+ Sbjct: 240 ETTYAYIKDRPRAPKGAAWEMARAYWETLHTDEGAHFDRVVKLDAANLPPIVTWGSSPEDVVSVTGYVPNADEIQDETKRLSKKRALEYMGLTAGTKITDIALDRVFIGSCTNGRIEDLRAAAKI--AEGRKVHPRINAMIVPGSGLVKAQ--------AEAEGLDKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ANADE (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=leuC PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16 Identity = 69/224 (30.80%), Postives = 99/224 (44.20%), Query Frame = 2 Query: 29 DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 D+ + + SDE A++ E R D S LEP++ +P + A AR + K+D V+IGSCT G+ ED AA+V G+KV+ T +VP + +V D + + ++ EAG + P C C+ D + CVST+NRNF G G G LASP TAA +A+T V DP+ L Sbjct: 269 DEAVARWRALPSDEGATYDRELRLDASALEPMITFGTNPGQGIAVTGLVPDPAAERDASARTTLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRVVREAGAEW-REPGCSMCIAMNGDD---IRAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVL 477
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ANASK (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter sp. (strain K) GN=leuC PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16 Identity = 69/224 (30.80%), Postives = 99/224 (44.20%), Query Frame = 2 Query: 29 DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 D+ + + SDE A++ E R D + LEP++ +P + A AR + K+D V+IGSCT G+ ED AA+V G+KV+ T +VP + +V D + + +I EAG + P C C+ D + CVST+NRNF G G G LASP TAA +A+T V DP+ L Sbjct: 269 DEAVARWRALPSDEGATYDRELRLDAAALEPMITFGTNPGQGIAVTGLVPDPVAERDASARATLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRIVREAGAEW-REPGCSMCIAMNGD---NIQAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVL 477
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ANAD2 (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=leuC PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.137e-15 Identity = 68/224 (30.36%), Postives = 99/224 (44.20%), Query Frame = 2 Query: 29 DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 D+ + + SD+ A++ E R D + LEP++ +P + A AR + K+D V+IGSCT G+ ED AA+V G+KV+ T +VP + +V D + + +I EAG + P C C+ D + CVST+NRNF G G G LASP TAA +A+T V DP+ L Sbjct: 269 DEAVARWRALPSDDGATYDRELRLDAAALEPMITFGTNPGQGIAVTGLVPDPVAERDASARATLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRIVREAGAEW-REPGCSMCIAMNGD---NLQAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVL 477 The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 284
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bpback to top |