FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_DESOH (3-isopropylmalate dehydratase large subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 74/187 (39.57%), Postives = 92/187 (49.20%), Query Frame = 2
Query:   47 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAG-CDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPK 598
            ++ + SD  A +      DIS L P V   + PD      E +   ID+VYIGSCT G+ ED   AAKV    GKKV   V   + PAT  V+             +     F  AG C T  +PTCGACLG      A      VC+STTNRNF G MG K G ++LASP TAA  A+   + + K
Sbjct:  254 FKKLVSDPDADYDRVLEMDISDLSPRVTYGYKPDCVKPVAEMEGTPIDQVYIGSCTNGRLEDLRVAAKVL--KGKKVHPSVRGIVSPATPTVFQAALE--------EGLIATFMAAGFCVT--NPTCGACLGMSNGVLA---PGEVCLSTTNRNFNGRMG-KGGMVHLASPATAAAGAIAGCITNSK 424          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_MYCS2 (3-isopropylmalate dehydratase large subunit OS=Mycobacterium smegmatis GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 63/202 (31.19%), Postives = 99/202 (49.01%), Query Frame = 2
Query:   17 KYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALA-RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLG------GPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            ++ +D     YEP ++D  A++ +    D+S L P VA+P +     ++  E +  KID+ +IGSC  G+ +D   AA++         V   + PA+Q+V+ D   L           Q   +AG     S TCGAC G      GP +         VC++++ RNF G MG  E  IY+ASP T A SA+  ++ D ++
Sbjct:  229 EHFDDLGITSYEPAHADPDAAYAAVREIDLSALAPYVARPGTVSRNGVSVDEVEPRKIDQAFIGSCANGQLDDLRIAAEILRGRRVAPGVRLIVTPASQQVYRDAMRLGY--------LQDIADAGAVITNS-TCGACFGYHMGVVGPGE---------VCLTSSTRNFTGRMGSTEAEIYMASPATVAASAVAGHITDARK 412          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_METTH (3-isopropylmalate dehydratase large subunit 2 OS=Methanobacterium thermoautotrophicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 61/197 (30.96%), Postives = 92/197 (46.70%), Query Frame = 2
Query:   11 TFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKE 601
            T  Y+  +T   +    SDE + +L ++ FD+S LEP VA P   DN       +   ID  ++GSCT G+ ED   AA+V         V   + PA++++++      +         + F  AG     +P CG CLG      A      V ++TTNRNF G MG     +YLA+P   A SA+   +  P++
Sbjct:  238 TLDYVRARTGREFRVYSSDEDSQYLEDHHFDVSDLEPQVACPDDVDNVYPVHRVEGTHIDEAFLGSCTNGRYEDLKIAAEVIGDRRVHEDVRFIVSPASREIYLKALEDGI--------IETFIRAGA-IVCNPGCGPCLGAHMGVLA---PGEVSIATTNRNFRGRMGDPASSVYLANPAVVAESAIEGVISAPQQ 422          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_HERA2 (3-isopropylmalate dehydratase large subunit OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=leuC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.416e-19
Identity = 65/178 (36.52%), Postives = 86/178 (48.31%), Query Frame = 2
Query:   74 ASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            AS+      D+S LEP V+ PH  DN     +   V +D VY+G+CT G  ED  AAA +         V   +VPA+ +      +L    S G   + +   A   T  +P CGAC+G      A      VCV T NRNF G MG    +IYLASP  AA +A+T Y+  P+  L
Sbjct:  247 ASYSRVVECDLSTLEPQVSVPHYVDNVVDLADVGRVAVDVVYLGTCTNGHYEDMAAAASILKGRRLAPNVRMIVVPASSE------SLHRAASDGTLATLL---AAGATIGTPGCGACIGRHMGVLA---PDEVCVFTGNRNFRGRMGSPGANIYLASPEVAAATAVTGYITHPRNVL 412          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_METKA (3-isopropylmalate dehydratase large subunit 2 OS=Methanopyrus kandleri GN=leuC2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17
Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  101 DISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLA-SGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            D S++EP+V+ PH  D+     + + V++ RV++GSCT G+  D     ++     G    V   +VPA+++V      L      G T   I         A P CG CLG   +    + +  VCVST NRNFPG MG +   IYLASP TAA +A    + DP++ L
Sbjct:  244 DASEVEPVVSVPHRVDDVRPVGDVQGVEVTRVFVGSCTNGRYRDVRVFTEILEELDGPHPDVRIVVVPASRRV------LERMTEAGLTLKLIRMGVMI---APPGCGPCLG---EHLGVLGDDDVCVSTANRNFPGRMGSRRAEIYLASPVTAAVAAAEGELVDPQDVL 401          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_OCHA4 (3-isopropylmalate dehydratase large subunit OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=leuC PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-16
Identity = 77/244 (31.56%), Postives = 109/244 (44.67%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E TF Y++DK   P           ++ ++SDE A F      D +K+ P+V+   SP++                        RAL         +  D+KIDRV+IGSCT G+ ED   AA+  +A+GKKV   V   +VP +  V           +  +   +IF EAG D    P C  CL    D   R+     C ST+NRNF G  G K G  +L SP  AA +A+  +  D +E+
Sbjct:  240 ETTFAYVQDKPRAPKGEALEQAISYWKTLHSDEGAHFDKIVELDAAKISPVVSWGSSPEDVVFVTDIVPNPDEIKDETKRASKWRALDYMGLKPGTKMTDIKIDRVFIGSCTNGRIEDLRDAAR--MAAGKKVAAGVNAMIVPGSGLVKEQ--------AEAEGLDKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_MESSB (3-isopropylmalate dehydratase large subunit OS=Mesorhizobium sp. (strain BNC1) GN=leuC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 73/244 (29.92%), Postives = 108/244 (44.26%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E T+ Y++D+   P           +E +++DE A F    + D + L P+V    SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAK+  A G+KV  ++   +VP +  V           +  +   +IF EAG D    P C  CL    D   R+     C ST+NRNF G  G K G  +L SP  AA +A+  +  D +E+
Sbjct:  240 ETTYAYIKDRPRAPKGAAWEMARAYWETLHTDEGAHFDRVVKLDAANLPPIVTWGSSPEDVVSVTGYVPNADEIQDETKRLSKKRALEYMGLTAGTKITDIALDRVFIGSCTNGRIEDLRAAAKI--AEGRKVHPRINAMIVPGSGLVKAQ--------AEAEGLDKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ANADE (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=leuC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.106e-16
Identity = 69/224 (30.80%), Postives = 99/224 (44.20%), Query Frame = 2
Query:   29 DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            D+    +  + SDE A++  E R D S LEP++    +P               +  A AR   +                 K+D V+IGSCT G+ ED   AA+V    G+KV+  T +VP + +V  D        +  +   ++  EAG +    P C  C+    D    +     CVST+NRNF G  G   G   LASP TAA +A+T  V DP+  L
Sbjct:  269 DEAVARWRALPSDEGATYDRELRLDASALEPMITFGTNPGQGIAVTGLVPDPAAERDASARTTLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRVVREAGAEW-REPGCSMCIAMNGDD---IRAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVL 477          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ANASK (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter sp. (strain K) GN=leuC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.668e-16
Identity = 69/224 (30.80%), Postives = 99/224 (44.20%), Query Frame = 2
Query:   29 DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            D+    +  + SDE A++  E R D + LEP++    +P               +  A AR   +                 K+D V+IGSCT G+ ED   AA+V    G+KV+  T +VP + +V  D        +  +   +I  EAG +    P C  C+    D    +     CVST+NRNF G  G   G   LASP TAA +A+T  V DP+  L
Sbjct:  269 DEAVARWRALPSDEGATYDRELRLDAAALEPMITFGTNPGQGIAVTGLVPDPVAERDASARATLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRIVREAGAEW-REPGCSMCIAMNGD---NIQAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVL 477          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_ANAD2 (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=leuC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.137e-15
Identity = 68/224 (30.36%), Postives = 99/224 (44.20%), Query Frame = 2
Query:   29 DKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP---------------DNRALARECKDV----------------KIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            D+    +  + SD+ A++  E R D + LEP++    +P               +  A AR   +                 K+D V+IGSCT G+ ED   AA+V    G+KV+  T +VP + +V  D        +  +   +I  EAG +    P C  C+    D    +     CVST+NRNF G  G   G   LASP TAA +A+T  V DP+  L
Sbjct:  269 DEAVARWRALPSDDGATYDRELRLDAAALEPMITFGTNPGQGIAVTGLVPDPVAERDASARATLEAALRYMGLVPGKPIAGQKVDVVFIGSCTNGRIEDMREAARVL--KGRKVRTRTLVVPGSHRVKKD--------AEAEGIDRIVREAGAEW-REPGCSMCIAMNGD---NLQAGQYCVSTSNRNFEGRQG-PGGRTLLASPLTAAAAAVTGAVADPRRVL 477          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC_DESOH2.215e-1939.573-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_MYCS22.893e-1931.193-isopropylmalate dehydratase large subunit OS=Myc... [more]
LEUC2_METTH3.778e-1930.963-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_HERA28.416e-1936.523-isopropylmalate dehydratase large subunit OS=Her... [more]
LEUC2_METKA2.073e-1735.293-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_OCHA41.029e-1631.563-isopropylmalate dehydratase large subunit OS=Och... [more]
LEUC_MESSB5.106e-1629.923-isopropylmalate dehydratase large subunit OS=Mes... [more]
LEUC_ANADE5.106e-1630.803-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_ANASK6.668e-1630.803-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_ANAD21.137e-1530.363-isopropylmalate dehydratase large subunit OS=Ana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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