FC876820
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_BRAJA (3-isopropylmalate dehydratase large subunit 2 OS=Bradyrhizobium japonicum GN=leuC2 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.309e-15 Identity = 75/249 (30.12%), Postives = 105/249 (42.17%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------DNRALARECK--------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SG-------GKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 + + +L D+ P +E + SD+ A F E R D +KL P+V SP D +A E K D+K+DRV+IGSCT G+ ED AAAK+ A GK+V V + VP SG + +IF +AG + P C CL D ++ C ST+NRNF G G K G +L SP AA +A+ + D +E+ Sbjct: 239 QKAYDFLRDRPKAPKGAAWDAAMRYWEKLRSDDGAHFDHELRLDAAKLPPIVTWGTSPEDVISVTGIVPDPDKIADEAKRLSKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAAAKI--AEGKQVSA-------------SVNAMVVPGSGIVKEQAEAEGLDKIFIKAGFEW-REPGCSMCLAMNPD---KLKPEERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDVREW 467
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LYS4_ASPNC (Homoaconitase, mitochondrial OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=lysA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15 Identity = 60/187 (32.09%), Postives = 89/187 (47.59%), Query Frame = 2 Query: 53 PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE--CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK--VKVPTFLVPATQKVWMDVYTLP--VP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595 P+ +D+ A + E D+S L P V+ P+S +E +D+K+D+ Y+ SCT + D AAAKVF + +K KVP + K ++ ++P + G + E PA CG C+G T + V +S +NRNF G MG E YL SP A SAL+ + P Sbjct: 337 PLTADKGAKYAKELFLDLSTLSPYVSGPNSVKIATPLKELEAQDIKVDKAYLVSCTNSRASDIAAAAKVFKDAAEKNGGKVPK--IADGVKFYIAAASIPEQLAAEGAGDWQTLLEAGATALPAG--CGPCIGLGT---GLLEPGEVGISASNRNFKGRMGSTEAKAYLGSPEIVAASALSGKLSGP 516
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHILO (3-isopropylmalate dehydratase large subunit OS=Rhizobium loti GN=leuC PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15 Identity = 72/242 (29.75%), Postives = 102/242 (42.15%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E TF Y++DK P ++ + SDE A F D +KL P+V+ SP++ RAL + D+ +DRV+IGSCT G+ ED AAAKV +V +VP + V + + +IF AG D P C CL D R+ C ST+NRNF G G K G +L SP AA +A+ + D +++ Sbjct: 240 ETTFAYVKDKPRAPKGAAWDAALAYWKTLQSDEGAHFDKVIVLDAAKLPPIVSWGSSPEDVVSVQGVVPNPEEITDENKRTSKIRALDYMGLTPGTKITDIALDRVFIGSCTNGRIEDLRAAAKVIEGKTVNPRVNAMIVPGSGLVKEQ--------AEAEGLDKIFLAAGFDW-REPGCSMCLAMNDD---RLKPHERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIRDW 468
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPS (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisB5) GN=leuC PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.373e-15 Identity = 76/244 (31.15%), Postives = 104/244 (42.62%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E + YL+ + P ++ + SDE A F E R D + L P+V SP++ RALA D+KIDR++IGSCT G+ ED AAAKV A GK V V +VP + V + + +IF +AG + P C CL D A C ST+NRNF G G K G +L SP AA +A+ + D +E+ Sbjct: 241 EKAYAYLKGRPMAPTGANWDAAMRYWDTLRSDEGAHFDHELRLDAAALPPIVTWGTSPEDVISITGRVPNPADIADEAKRLSKERALAYMGLTPGTRITDIKIDRMFIGSCTNGRIEDLRAAAKV--AEGKTVNGNVSAMIVPGSGLVKEQ--------AEAEGLDKIFVKAGFEW-REPGCSMCLAMNPDKLAPEER---CASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 469
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SINMW (3-isopropylmalate dehydratase large subunit OS=Sinorhizobium medicae (strain WSM419) GN=leuC PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15 Identity = 74/244 (30.33%), Postives = 103/244 (42.21%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E TF Y+ED+ P ++ +++DE A + D + L P+V+ SP++ RAL D+ IDRV+IGSCT G+ ED A AKV G+KV V +VP + V + +IF EAG D P C CL D R+ C ST+NRNF G G K G +L SP AA +A+ + D +E+ Sbjct: 240 ETTFAYIEDRPRAPKGEAWDMAVEYWKTLHTDEGAHYDRVVVLDAANLPPIVSWGSSPEDVVSVQGVVPNPDEIPDETKRTSKWRALDYMGLKPGTRITDIAIDRVFIGSCTNGRIEDLRAVAKV--VEGRKVAPTVSAMIVPGSGLVKEQAEV--------EGLDKIFREAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLLSPAMAAAAAIAGHFVDIREW 468
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PROMS (3-isopropylmalate dehydratase large subunit OS=Prochlorococcus marinus (strain AS9601) GN=leuC PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15 Identity = 65/242 (26.86%), Postives = 102/242 (42.15%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVA------------------KPHSPDNRALAREC------------KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607 E TF Y++DK P ++ + SDE + + + D SK+EP V SP+++ +A+E KD +D +IGSCT G+ D AA+V V F+VP ++KV + + + +IF+++G P C CL +D ++ V S++NRNF G G G L SP A +A+ V D +EF+ Sbjct: 238 EKTFSYIKDKLCAPKNEYWDKALTWWKSLKSDENSIYDDVIKLDASKVEPTVTWGITPGQSISINQQIPLLDDLSPNDKLVAKEAYEYMSFKPGQYIKDTPVDVCFIGSCTNGRISDLRVAARVLKNKKVSKNVKAFVVPGSEKVATE--------AKQEGLDEIFKDSGFQW-REPGCSMCLAMNSD---KLIGNQVSASSSNRNFKGRQGSPSGRTLLMSPAMVAAAAINGKVSDVREFI 467
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHISN (3-isopropylmalate dehydratase large subunit OS=Rhizobium sp. (strain NGR234) GN=leuC PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14 Identity = 73/244 (29.92%), Postives = 106/244 (43.44%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E TF Y++DK P ++ +++DE A + D + L P+V+ SP++ RAL + D+ +DRV+IGSCT G+ ED A AKV G+KV V +VP + V + + +IF+EAG D P C CL D R+ C ST+NRNF G G K G +L SP AA +A+ + D +E+ Sbjct: 240 ETTFDYIKDKPRAPKGKAWDMALDYWKTLHTDEGAHYDRIVVLDAADLPPIVSWGSSPEDVISVQGAVPNPDDIQEETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAVAKV--VEGRKVASTVSAMIVPGSGLVKEQ--------AEAEGLDKIFKEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAVAGHFVDIREW 468
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHIME (3-isopropylmalate dehydratase large subunit OS=Rhizobium meliloti GN=leuC PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14 Identity = 73/244 (29.92%), Postives = 107/244 (43.85%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E TF+Y++DK P ++ +++DE A + D + L P+V+ SP++ RAL + D+ IDRV+IGSCT G+ ED A A+V G+KV V +VP + V + + +IF+EAG D P C CL D R+ C ST+NRNF G G K G +L SP AA +A+ + D +E+ Sbjct: 240 ETTFEYIKDKPRAPKGEAWDRAVEYWKTLHTDEGAHYDRVVVLDAANLPPIVSWGSSPEDVVSVQGVVPNPDDIQDETKRTSKWRALDYMGLKPGTKITDIAIDRVFIGSCTNGRIEDLRAVAEV--VEGRKVAPTVSAMIVPGSGLVKEQ--------AEAEGLDKIFKEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLLSPAMAAAAAVAGHFVDIREW 468
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_METSB (3-isopropylmalate dehydratase large subunit OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=leuC PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14 Identity = 69/238 (28.99%), Postives = 97/238 (40.76%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPD 592 + TF +L+D+ P + ++SDE A F E R D + L P+V SP++ RAL + D+ IDRV+IGSCT G+ ED AAAK+ V +VP + V + + +F EAG + P C CL D R+ C ST+NRNF G G K G +L SP AA + + + D Sbjct: 239 DKTFAFLKDRPKSPKGKAWDEAVAHWRTLHSDEGAHFDKEVRLDAASLPPIVTWGTSPEDVATINGEVPRVESAMSEAKRVSIARALDYMGLKGGEKITDISIDRVFIGSCTNGRLEDLRAAAKILAGKHIAAHVNGMVVPGSGLVKQQ--------AEAEGLDVVFREAGFEW-REPGCSMCLAMNPD---RLEPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAGVAGHFVD 463
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_AGRVS (3-isopropylmalate dehydratase large subunit OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=leuC PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14 Identity = 70/242 (28.93%), Postives = 103/242 (42.56%), Query Frame = 2 Query: 5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604 E TF+Y++ K P ++ +++DE A F D + L P+V+ SP++ RAL + D+ IDRV+IGSCT G+ ED AAA V V +VP + V + + +IF +AGC+ P C CL D R+ C ST+NRNF G G+K G +L SP AA +A+ + D +E+ Sbjct: 240 EKTFEYIKGKPRAPKGEELEMALQYWKTLHTDEGAHFDRTVVLDAANLPPIVSWGSSPEDVISVQGVVPNPDDIADENKRTSKWRALDYMGLKPGTKITDITIDRVFIGSCTNGRIEDLRAAAAVLKDRKVASTVSAMVVPGSGLVKEQ--------AEAEGLDKIFLDAGCEW-REPGCSMCLAMNDD---RLKPEERCASTSNRNFEGRQGYK-GRTHLVSPAMAAAAAIAGHFVDIREW 468 The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 284
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bpback to top |