FC876820

Overview
NameFC876820
Unique NameFC876820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC2_BRAJA (3-isopropylmalate dehydratase large subunit 2 OS=Bradyrhizobium japonicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.309e-15
Identity = 75/249 (30.12%), Postives = 105/249 (42.17%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------DNRALARECK--------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SG-------GKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            +  + +L D+   P           +E + SD+ A F  E R D +KL P+V    SP           D   +A E K                    D+K+DRV+IGSCT G+ ED  AAAK+  A GK+V                V  + VP SG        +   +IF +AG +    P C  CL    D   ++     C ST+NRNF G  G K G  +L SP  AA +A+  +  D +E+
Sbjct:  239 QKAYDFLRDRPKAPKGAAWDAAMRYWEKLRSDDGAHFDHELRLDAAKLPPIVTWGTSPEDVISVTGIVPDPDKIADEAKRLSKHRALKYMGLTAGTKITDIKLDRVFIGSCTNGRIEDLRAAAKI--AEGKQVSA-------------SVNAMVVPGSGIVKEQAEAEGLDKIFIKAGFEW-REPGCSMCLAMNPD---KLKPEERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDVREW 467          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LYS4_ASPNC (Homoaconitase, mitochondrial OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=lysA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 60/187 (32.09%), Postives = 89/187 (47.59%), Query Frame = 2
Query:   53 PVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARE--CKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKK--VKVPTFLVPATQKVWMDVYTLP--VP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDP 595
            P+ +D+ A +  E   D+S L P V+ P+S       +E   +D+K+D+ Y+ SCT  +  D  AAAKVF  + +K   KVP   +    K ++   ++P  +   G      + E      PA   CG C+G  T     +    V +S +NRNF G MG  E   YL SP   A SAL+  +  P
Sbjct:  337 PLTADKGAKYAKELFLDLSTLSPYVSGPNSVKIATPLKELEAQDIKVDKAYLVSCTNSRASDIAAAAKVFKDAAEKNGGKVPK--IADGVKFYIAAASIPEQLAAEGAGDWQTLLEAGATALPAG--CGPCIGLGT---GLLEPGEVGISASNRNFKGRMGSTEAKAYLGSPEIVAASALSGKLSGP 516          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHILO (3-isopropylmalate dehydratase large subunit OS=Rhizobium loti GN=leuC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 72/242 (29.75%), Postives = 102/242 (42.15%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E TF Y++DK   P           ++ + SDE A F      D +KL P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV        +V   +VP +  V           +  +   +IF  AG D    P C  CL    D   R+     C ST+NRNF G  G K G  +L SP  AA +A+  +  D +++
Sbjct:  240 ETTFAYVKDKPRAPKGAAWDAALAYWKTLQSDEGAHFDKVIVLDAAKLPPIVSWGSSPEDVVSVQGVVPNPEEITDENKRTSKIRALDYMGLTPGTKITDIALDRVFIGSCTNGRIEDLRAAAKVIEGKTVNPRVNAMIVPGSGLVKEQ--------AEAEGLDKIFLAAGFDW-REPGCSMCLAMNDD---RLKPHERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIRDW 468          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPS (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisB5) GN=leuC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.373e-15
Identity = 76/244 (31.15%), Postives = 104/244 (42.62%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E  + YL+ +   P           ++ + SDE A F  E R D + L P+V    SP++                        RALA           D+KIDR++IGSCT G+ ED  AAAKV  A GK V   V   +VP +  V           +  +   +IF +AG +    P C  CL    D  A       C ST+NRNF G  G K G  +L SP  AA +A+  +  D +E+
Sbjct:  241 EKAYAYLKGRPMAPTGANWDAAMRYWDTLRSDEGAHFDHELRLDAAALPPIVTWGTSPEDVISITGRVPNPADIADEAKRLSKERALAYMGLTPGTRITDIKIDRMFIGSCTNGRIEDLRAAAKV--AEGKTVNGNVSAMIVPGSGLVKEQ--------AEAEGLDKIFVKAGFEW-REPGCSMCLAMNPDKLAPEER---CASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 469          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_SINMW (3-isopropylmalate dehydratase large subunit OS=Sinorhizobium medicae (strain WSM419) GN=leuC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 74/244 (30.33%), Postives = 103/244 (42.21%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E TF Y+ED+   P           ++ +++DE A +      D + L P+V+   SP++                        RAL            D+ IDRV+IGSCT G+ ED  A AKV    G+KV   V   +VP +  V              +   +IF EAG D    P C  CL    D   R+     C ST+NRNF G  G K G  +L SP  AA +A+  +  D +E+
Sbjct:  240 ETTFAYIEDRPRAPKGEAWDMAVEYWKTLHTDEGAHYDRVVVLDAANLPPIVSWGSSPEDVVSVQGVVPNPDEIPDETKRTSKWRALDYMGLKPGTRITDIAIDRVFIGSCTNGRIEDLRAVAKV--VEGRKVAPTVSAMIVPGSGLVKEQAEV--------EGLDKIFREAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLLSPAMAAAAAIAGHFVDIREW 468          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_PROMS (3-isopropylmalate dehydratase large subunit OS=Prochlorococcus marinus (strain AS9601) GN=leuC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 65/242 (26.86%), Postives = 102/242 (42.15%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVA------------------KPHSPDNRALAREC------------KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEFL 607
            E TF Y++DK   P           ++ + SDE + +    + D SK+EP V                      SP+++ +A+E             KD  +D  +IGSCT G+  D   AA+V         V  F+VP ++KV  +        +  +   +IF+++G      P C  CL   +D   ++    V  S++NRNF G  G   G   L SP   A +A+   V D +EF+
Sbjct:  238 EKTFSYIKDKLCAPKNEYWDKALTWWKSLKSDENSIYDDVIKLDASKVEPTVTWGITPGQSISINQQIPLLDDLSPNDKLVAKEAYEYMSFKPGQYIKDTPVDVCFIGSCTNGRISDLRVAARVLKNKKVSKNVKAFVVPGSEKVATE--------AKQEGLDEIFKDSGFQW-REPGCSMCLAMNSD---KLIGNQVSASSSNRNFKGRQGSPSGRTLLMSPAMVAAAAINGKVSDVREFI 467          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHISN (3-isopropylmalate dehydratase large subunit OS=Rhizobium sp. (strain NGR234) GN=leuC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 73/244 (29.92%), Postives = 106/244 (43.44%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E TF Y++DK   P           ++ +++DE A +      D + L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  A AKV    G+KV   V   +VP +  V           +  +   +IF+EAG D    P C  CL    D   R+     C ST+NRNF G  G K G  +L SP  AA +A+  +  D +E+
Sbjct:  240 ETTFDYIKDKPRAPKGKAWDMALDYWKTLHTDEGAHYDRIVVLDAADLPPIVSWGSSPEDVISVQGAVPNPDDIQEETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAVAKV--VEGRKVASTVSAMIVPGSGLVKEQ--------AEAEGLDKIFKEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAVAGHFVDIREW 468          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_RHIME (3-isopropylmalate dehydratase large subunit OS=Rhizobium meliloti GN=leuC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 73/244 (29.92%), Postives = 107/244 (43.85%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E TF+Y++DK   P           ++ +++DE A +      D + L P+V+   SP++                        RAL         +  D+ IDRV+IGSCT G+ ED  A A+V    G+KV   V   +VP +  V           +  +   +IF+EAG D    P C  CL    D   R+     C ST+NRNF G  G K G  +L SP  AA +A+  +  D +E+
Sbjct:  240 ETTFEYIKDKPRAPKGEAWDRAVEYWKTLHTDEGAHYDRVVVLDAANLPPIVSWGSSPEDVVSVQGVVPNPDDIQDETKRTSKWRALDYMGLKPGTKITDIAIDRVFIGSCTNGRIEDLRAVAEV--VEGRKVAPTVSAMIVPGSGLVKEQ--------AEAEGLDKIFKEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLLSPAMAAAAAVAGHFVDIREW 468          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_METSB (3-isopropylmalate dehydratase large subunit OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=leuC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 69/238 (28.99%), Postives = 97/238 (40.76%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPD 592
            + TF +L+D+   P           +  ++SDE A F  E R D + L P+V    SP++                        RAL         +  D+ IDRV+IGSCT G+ ED  AAAK+         V   +VP +  V           +  +    +F EAG +    P C  CL    D   R+     C ST+NRNF G  G K G  +L SP  AA + +  +  D
Sbjct:  239 DKTFAFLKDRPKSPKGKAWDEAVAHWRTLHSDEGAHFDKEVRLDAASLPPIVTWGTSPEDVATINGEVPRVESAMSEAKRVSIARALDYMGLKGGEKITDISIDRVFIGSCTNGRLEDLRAAAKILAGKHIAAHVNGMVVPGSGLVKQQ--------AEAEGLDVVFREAGFEW-REPGCSMCLAMNPD---RLEPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAGVAGHFVD 463          
BLAST of FC876820 vs. ExPASy Swiss-Prot
Match: LEUC_AGRVS (3-isopropylmalate dehydratase large subunit OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=leuC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 70/242 (28.93%), Postives = 103/242 (42.56%), Query Frame = 2
Query:    5 EATFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVP*SGGKTCSQIFEEAGCDTPASPTCGACLGGPTDTYARMNEPMVCVSTTNRNFPGPMGHKEGHIYLASPYTAATSALTVYVPDPKEF 604
            E TF+Y++ K   P           ++ +++DE A F      D + L P+V+   SP++                        RAL         +  D+ IDRV+IGSCT G+ ED  AAA V         V   +VP +  V           +  +   +IF +AGC+    P C  CL    D   R+     C ST+NRNF G  G+K G  +L SP  AA +A+  +  D +E+
Sbjct:  240 EKTFEYIKGKPRAPKGEELEMALQYWKTLHTDEGAHFDRTVVLDAANLPPIVSWGSSPEDVISVQGVVPNPDDIADENKRTSKWRALDYMGLKPGTKITDITIDRVFIGSCTNGRIEDLRAAAAVLKDRKVASTVSAMVVPGSGLVKEQ--------AEAEGLDKIFLDAGCEW-REPGCSMCLAMNDD---RLKPEERCASTSNRNFEGRQGYK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
The following BLAST results are available for this feature:
BLAST of FC876820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
LEUC2_BRAJA3.309e-1530.123-isopropylmalate dehydratase large subunit 2 OS=B... [more]
LYS4_ASPNC5.645e-1532.09Homoaconitase, mitochondrial OS=Aspergillus niger ... [more]
LEUC_RHILO5.645e-1529.753-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_RHOPS7.373e-1531.153-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_SINMW9.629e-1530.333-isopropylmalate dehydratase large subunit OS=Sin... [more]
LEUC_PROMS9.629e-1526.863-isopropylmalate dehydratase large subunit OS=Pro... [more]
LEUC_RHISN1.258e-1429.923-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_RHIME1.258e-1429.923-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_METSB1.258e-1428.993-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_AGRVS1.258e-1428.933-isopropylmalate dehydratase large subunit OS=Agr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC08RM1 EHR Citrus clementina cDNA clone KN0AAN1CC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876820 ID=FC876820; Name=FC876820; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGCAACATTTAAATATCTTGAGGATAAGACATCGTTGCCCTATG
AACCAGTTTATAGTGATGAGAAAGCAAGTTTCCTGTCCGAATACAGATTT
GATATCTCGAAGCTGGAGCCACTGGTGGCAAAGCCTCATTCTCCTGACAA
TCGGGCTTTAGCAAGAGAGTGCAAAGATGTAAAAATTGACAGAGTATACA
TTGGATCTTGCACTGGTGGAAAAACAGAAGACTTTCTTGCTGCAGCGAAA
GTCTTCTTAGCTTCAGGCAAAAAGGTCAAAGTTCCAACATTTCTTGTCCC
TGCTACCCAAAAGGTATGGATGGACGTATACACTCTTCCAGTACCATGAT
CTGGTGGCAAGACTTGCTCTCAGATATTTGAAGAAGCTGGTTGCGACACA
CCTGCGAGTCCTACTTGCGGTGCTTGTTTGGGTGGCCCTACAGACACTTA
TGCACGCATGAATGAACCTATGGTCTGTGTCTCCACGACAAATAGGAACT
TCCCTGGACCGATGGGACACAAAGAAGGCCATATATATCTTGCTTCTCCA
TACACAGCTGCAACATCTGCTTTGACTGTTTATGTCCCTGATCCTAAGGA
GTTCTTG
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