FC876821

Overview
NameFC876821
Unique NameFC876821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length248
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.395e-25
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT DVS+V+L V+LEKE TY+++K
Sbjct:  180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLEKEATYDQIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.822e-25
Identity = 57/77 (74.03%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEEL 240
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLPALAG LTG+S  VPT DVS+V+L V L+K TTYE++
Sbjct:  181 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPALAGKLTGMSMRVPTTDVSVVDLTVNLKKPTTYEDI 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.822e-25
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELKN 246
            TAT KTVDGPS  DWRGGR A+ ++IPSSTGAAKAVGKV+P+L G LTG+SF VPT DVS+V+L  R+EK  +YEE+KN
Sbjct:  181 TATQKTVDGPSHKDWRGGRGAAANIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPTSDVSVVDLVCRIEKGASYEEIKN 259          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.822e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT DVS+V+L V+L KE TY+E+K
Sbjct:  179 TATQKTVDGPSQKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKEATYDEIK 256          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.379e-25
Identity = 56/78 (71.79%), Postives = 66/78 (84.62%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP+L G LTG++F VPT DVS+V+L V L KET+Y+E+K
Sbjct:  180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPSLQGKLTGMAFRVPTVDVSVVDLTVNLAKETSYDEIK 257          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.107e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKV+P L G LTG++F VPT +VS+V+L VRLEK  TYEE+K
Sbjct:  165 TATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVIPELKGKLTGMAFRVPTPNVSVVDLTVRLEKPATYEEIK 242          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.107e-25
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR A  ++IPSSTGAAKAVGKV+P L G LTG++F VPT DVS+V+L VRLEK  TYEE+K
Sbjct:  181 TATQKTVDGPSNKDWRGGRGAGANIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKGATYEEIK 258          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.107e-25
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKVLP L G LTG++F VPT DVS+V+L V+L KE TY+E+K
Sbjct:  179 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKEATYDEIK 256          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.058e-25
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKV+PAL G LTG++F VPT DVS+V+L V+L K T YE++K
Sbjct:  182 TATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIK 259          
BLAST of FC876821 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.058e-25
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 1
Query:   10 TATHKTVDGPSMNDWRGGRAASFDLIPSSTGAAKAVGKVLPALAGTLTGLSFPVPTGDVSMVNLPVRLEKETTYEELK 243
            TAT KTVDGPS  DWRGGR AS ++IPSSTGAAKAVGKV+PAL G LTG++F VPT DVS+V+L V+L K T YE++K
Sbjct:  182 TATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIK 259          
The following BLAST results are available for this feature:
BLAST of FC876821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
G3P1_YEAST1.395e-2571.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_PICAN1.822e-2574.03Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CRYNE1.822e-2569.62Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P2_KLULA1.822e-2571.79Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_ZYGRO2.379e-2571.79Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_SERMA3.107e-2571.79Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_RHIRA3.107e-2571.79Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P1_KLULA3.107e-2571.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P2_SCHPO4.058e-2570.51Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P1_SCHPO4.058e-2570.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC09RM1 EHR Citrus clementina cDNA clone KN0AAN1CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876821 ID=FC876821; Name=FC876821; organism=Citrus clementina; type=EST; length=248bp
GCACGAGGCACTGCCACTCACAAGACTGTTGATGGACCATCAATGAACGA
CTGGAGAGGTGGCAGAGCTGCTTCCTTCGACCTCATTCCCAGCAGCACCG
GTGCTGCCAAGGCAGTTGGTAAGGTTTTGCCTGCCCTTGCTGGTACATTG
ACCGGACTGTCCTTCCCAGTTCCTACCGGTGATGTCTCAATGGTCAACCT
CCCTGTCCGACTTGAAAAGGAGACGACTTATGAGGAACTTAAAAATGC
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