FC876826

Overview
NameFC876826
Unique NameFC876826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876826 vs. ExPASy Swiss-Prot
Match: TRM61_CANGA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida glabrata GN=TRM61 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.602e-21
Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSPFQNRFGAFKHSDWIGKPFGSMV-----FSNKGGFVYLLAPTPELWTLVLSHRTQILYIANISFVIMYLQLVPGCLVXXXXXXXXXXXXXXARAVTPTGHVYTFDFHDQTAASAREDFERTGV---NIFVTVGVRDIQGQGF 624
            I+EGDL +++   D +K V +  N  F  R+G+F H D IGKP+GS +      + K  FV+++ P+PELWTL L HRTQI+Y  + S+++  L   P   V              AR+V   G +Y+++FH      A E+F+  G+   N  +T   RD+   GF
Sbjct:   12 IQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAKKFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAFARSV---GQLYSYEFHPVRYEQATEEFKEHGLLDKNTIIT--HRDVCKDGF 173          
BLAST of FC876826 vs. ExPASy Swiss-Prot
Match: TRM61_SCHPO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Schizosaccharomyces pombe GN=cpd1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 57/168 (33.93%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSPFQNRFGAFKHSDWIGKPFGSMVFSN-KGGFVYLLAPTPELWTLVLSHRTQILYIANISFVIMYLQLVPGCLVXXXXXXXXXXXXXXARAVTPTGHVYTFDFHDQTAASAREDFER------TGVNIFVTVGVRDIQGQGFPD 630
            ++ GDL + +   + +  + +     F N++GAF HS+ IGK +G  + S  K GF+YLL PTPELWTL L HRTQI+Y  +I+ +   L++  G  V              +R V P G ++TF++H     +A ++F         G N  +T   RD+   GF D
Sbjct:   10 VENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGFIYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEMLIDVGGNTHLT--HRDVCKDGFLD 175          
BLAST of FC876826 vs. ExPASy Swiss-Prot
Match: TRM61_ASHGO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Ashbya gossypii GN=TRM61 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.357e-20
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSPFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHRTQILYIANISFVIMYLQLVPGCLVXXXXXXXXXXXXXXARAVTPTGHVYTFDFHDQTAASAREDFERTGV--NIFVTVGVRDIQGQGF 624
            I EGDLV+V+     +K +++     F  R+G+F H D +G+P+GS +      SN+ GF+++L PTPELWTL L HRTQI+Y  + S+++  L   P   V              AR V   G +++++FH      A  +F+  G+  +  VT+  RD+  +GF
Sbjct:   11 IAEGDLVLVWISRGNVKQLRIKSGEVFNTRYGSFAHDDIVGRPYGSQIGVRTKGSNRFGFIHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLGCSPQSRVIEAGTGSGSFSHAFARTV---GQLFSYEFHHMRYEQALAEFQEHGLIADGNVTITHRDVCQKGF 173          
BLAST of FC876826 vs. ExPASy Swiss-Prot
Match: TRM61_YARLI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Yarrowia lipolytica GN=TRM61 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.558e-19
Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSP-FQNRFGAFKHS--DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIANISFVIMYLQLVPGCLVXXXXXXXXXXXXXXARAVTPTGHVYTFDFHDQTAASAREDFERTGV-NIFVTVGVRDIQGQGFPDE 633
            I++GDLV+ +     +K + V +    F  R+GAF H   D  G   GSM   +K GF++L+ PTPELWTL L HRTQI+Y  + S+++  L++ PG  V              +R+    G VY+++FH++    A+++FER  + N+  T   RD+   GF  E
Sbjct:    9 IEDGDLVLGWMTRTAIKPIVVEKKEGLFNTRYGAFPHRNMDKYGAQLGSM---SKQGFIHLIHPTPELWTLSLPHRTQIVYTTDSSYIVQRLKIRPGSTVIESGTGSGSFTHAISRSAGLAGKVYSYEFHEERYNLAKQEFERHQLTNVIPT--HRDVCNDGFDIE 169          
BLAST of FC876826 vs. ExPASy Swiss-Prot
Match: TRM61_ASPFU (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus fumigatus GN=trm61 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 53/185 (28.65%), Postives = 73/185 (39.46%), Query Frame = 1
Query:  235 RFGAFKHSDWIGKPFGSMVF----------------------------SNK--------------GGFVYLLAPTPELWTLVLSHRTQILYIANISFVIMYLQLVPGCLVXXXXXXXXXXXXXXARAV-------------TPTGHVYTFDFHDQTAASAREDFERTGVNIFVTVGVRDIQGQGF 624
            RFG+F HS  I +P+GS +                             SNK               GF++LL PTPELWT  L HRTQ++Y  + S+++  L + PG  +               RAV                G V +F+FH Q A   RE+    G++  V V  RD+   GF
Sbjct:   51 RFGSFPHSTLIDQPWGSQIVASVVDTGSRGRKNQSSKKRKADDLDTPTSNKDEAQSSPGTPRAAASGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLCVRPGSTIIEAGAGSGSFTHASVRAVFNGYPSEAPAAKKRRLGKVCSFEFHAQRAQRIREEIHDHGLDALVEVTHRDVYEDGF 235          
BLAST of FC876826 vs. ExPASy Swiss-Prot
Match: TRM61_ASPOR (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Aspergillus oryzae GN=trm61 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 51/181 (28.18%), Postives = 73/181 (40.33%), Query Frame = 1
Query:  235 RFGAFKHSDWIGKPFGSMVFSNK--------------------------------------GGFVYLLAPTPELWTLVLSHRTQILYIANISFVIMYLQLVPGCLVXXXXXXXXXXXXXXARAV--------TPT-----GHVYTFDFHDQTAASAREDFERTGVNIFVTVGVRDIQGQGF 624
            RFG+F H     +P+GS + ++K                                       GF++LL PTPELWT  L HRTQ++Y  + S+++  L+  PG  V               RAV         PT     G V +F+FH Q A   R +  + G++  V V  RD+   GF
Sbjct:   51 RFGSFPHITLCDQPWGSQIIASKVDTGSRGRTQKMKRKADELDSSTQAEDKPSPQTPVAASSGFLHLLYPTPELWTASLPHRTQVVYTPDYSYILHRLRARPGSTVIEAGAGSGSFTHASVRAVFNGYPSDDQPTKKRRLGKVCSFEFHAQRAEKVRVEVNQHGLDGLVEVTHRDVYEDGF 231          
The following BLAST results are available for this feature:
BLAST of FC876826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRM61_CANGA1.602e-2135.33tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_SCHPO1.357e-2033.93tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASHGO1.357e-2034.34tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YARLI2.558e-1935.54tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPFU1.503e-1128.65tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASPOR2.564e-1128.18tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CD04RM1 EHR Citrus clementina cDNA clone KN0AAN1CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876826 ID=FC876826; Name=FC876826; organism=Citrus clementina; type=EST; length=657bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTTACTCGATGCATT
AAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAGC
TGTTAAAGTATGCCAGAACTCACCTTTCCAGAACCGTTTTGGTGCGTTTA
AACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCAGTAAC
AAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTCT
GGTTTTGAGCCATAGAACTCAAATACTTTACATTGCAAATATTAGCTTTG
TCATCATGTACTTACAACTTGTTCCTGGTTGTTTGGTTCTGCAGTCAGGG
ACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGCTGTAACTCCTAC
AGGACATGTCTATACTTTTGATTTTCATGATCAAACGGCTGCCTCAGCTA
GGGAAGACTTTGAGAGGACAGGAGTGAACATTTTTGTTACTGTGGGTGTT
AGAGATATCCAGGGTCAGGGATTTCCTGATGAATTTACTGGGTTAGCTGA
TTCTATA
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