FC876838

Overview
NameFC876838
Unique NameFC876838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 45/96 (46.88%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+     +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          

HSP 2 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK     K   + VK G +V+YSKYAGTE++  G +++++ E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 45/96 (46.88%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+     +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          

HSP 2 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK     K   + VK G +V+YSKYAGTE++  G +++++ E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DESHY (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPLGDRV++K   +EEKT  GI +P  A+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LI++E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          

HSP 2 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            ++KPL DRV IK    EE T  G+++ + +KEKP  G V+AVGPG + E+G R  L +  G+ V+YSKYAG + K  DG  Y+  K ++++AV+
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKM-EKGERIVLDVKVGDRVIYSKYAGTEVK-YDGQEYLILKETDILAVI 93          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DESHD (10 kDa chaperonin OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPLGDRV++K   +EEKT  GI +P  A+ KPQ GEVVAVG GK     ++ + VK G +VIYSKYAGTE++++G  +LI++E D++ ++
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKMEKGERIVLDVKVGDRVIYSKYAGTEVKYDGQEYLILKETDILAVI 93          

HSP 2 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            ++KPL DRV IK    EE T  G+++ + +KEKP  G V+AVGPG + E+G R  L +  G+ V+YSKYAG + K  DG  Y+  K ++++AV+
Sbjct:    2 NIKPLGDRVVIKALPMEEKTKSGIIMPDTAKEKPQEGEVVAVGPGKM-EKGERIVLDVKVGDRVIYSKYAGTEVK-YDGQEYLILKETDILAVI 93          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DESDG (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 47/94 (50.00%), Postives = 70/94 (74.47%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEV+AVG GKT    K + ++VK G  V+++KYAGTE++ +G +HL++REDD++ I++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVKLDGVDHLVMREDDILAIIQ 95          

HSP 2 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G VIAVGPG   ++G    +++  G+ V+++KYAG + K  DG +++  +  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVIAVGPGKTADDGKVIAMTVKTGDVVLFNKYAGTEVK-LDGVDHLVMREDDILAII 94          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 47/92 (51.09%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   +++  VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKPL DRV +KV ++EE T GG++L   +KEKP  G V+AVGPG    +G R    +  G+ V++SKYAG + K  DG  Y+  + S+++A++
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQY-IDGKRVEPEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROM5 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9515) GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +  +KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+     +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          

HSP 2 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNPW (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) GN=groS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+     +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          

HSP 2 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +  LKPL DRVF+KV+E+EE TAGG+LL +++KEKP IG V+AVG G  +++G+R  + +  G+ V+YSKYAG D K S G +Y+     +++A ++
Sbjct:    8 VSTLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLS-GDDYVLLSEKDILATVA 103          

HSP 2 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 373
            +++KPLGDRV VK+   EEKT GGI LP +A+ KPQ GEVVAVGEGK     ++  + VK G +V+YSKYAGT+++ +G +++++ E D++
Sbjct:    9 STLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLSGDDYVLLSEKDIL 99          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 45/97 (46.39%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVF+KV+ +EE TAGG+ L +A+KEKP IG V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G  ++     +++A +S
Sbjct:    8 VTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIK-LGGEEFVLLSEKDILAAVS 103          

HSP 2 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 373
            T++KPLGDRV VK+   EEKT GGIFLP AA+ KPQ GEVVAVG GK     ++  + V  G +V+YSKYAGT+++  G   +++ E D++
Sbjct:    9 TTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIKLGGEEFVLLSEKDIL 99          
The following BLAST results are available for this feature:
BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_THEVL3.120e-2146.8810 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB3.120e-2146.8810 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_DESHY5.322e-2151.0910 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESHD5.322e-2151.0910 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]
CH10_DESDG5.322e-2150.0010 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_THETN6.951e-2151.0910 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH10_PROM59.078e-2147.4210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_SYNPW1.186e-2047.9610 kDa chaperonin OS=Synechococcus sp. (strain WH7... [more]
CH10_SYNP21.549e-2047.4210 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_MICAN1.549e-2046.3910 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT
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