FC876838

Overview
NameFC876838
Unique NameFC876838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_EXISA (10 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +KPLGDRV++++   EEKT GGI LP  A+ KPQ G+VVAVG G+   + K +D+ VK    VIYSKYAGTE++ +G  +LIVRE D++ I+
Sbjct:    2 LKPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKRIDLDVKENDLVIYSKYAGTEVKHDGKEYLIVRESDILAIV 93          

HSP 2 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKPL DRV I+V E EE T GG++L + +KEKP  G V+AVG G + +EG R  L +   + V+YSKYAG + K  DG  Y+  + S+++A++
Sbjct:    2 LKPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKRIDLDVKENDLVIYSKYAGTEVK-HDGKEYLIVRESDILAIV 93          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 44/94 (46.81%), Postives = 67/94 (71.28%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMA 676
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP +G V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G +Y+     +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILA 100          

HSP 2 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 373
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVVAVG GK     ++  I VK G +V+YSKYAGT+++  G +++++ E D++
Sbjct:    9 STVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDIL 99          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+E+G+R+   ++ G+ V+YSKYAG D K   G  Y+     +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          

HSP 2 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNSC (10 kDa chaperonin OS=Synechococcus sp. (strain CC9605) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+     +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDNVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          

HSP 2 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 42/94 (44.68%), Postives = 59/94 (62.77%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK           V  G  V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDNVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROMP (10 kDa chaperonin OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +  +KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+     +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102          

HSP 2 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94          

HSP 2 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 43/95 (45.26%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++  +  +++AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94          

HSP 2 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 43/95 (45.26%), Postives = 68/95 (71.58%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++  +  +++AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNS9 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9902) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+     +++A+++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAIVN 103          

HSP 2 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK     ++    V  G +V+YSKYAGT+++     ++++ E D++ I+
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAIV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     ++++ E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          

HSP 2 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVL 682
            +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+     +++A++
Sbjct:    8 VSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     ++++ E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103          

HSP 2 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:  386 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVL 682
            T  +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+     +++A++
Sbjct:    5 TLNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102          
The following BLAST results are available for this feature:
BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_EXISA1.549e-2053.2610 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH10_CYAP71.549e-2046.8110 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_PROMS2.022e-2047.4210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_SYNSC2.641e-2046.9410 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_PROMP2.641e-2046.8810 kDa chaperonin OS=Prochlorococcus marinus subsp... [more]
CH10_LAWIP2.641e-2050.5410 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN2.641e-2050.5410 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_SYNS93.450e-2046.9410 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_SYNJB3.450e-2051.5810 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_SYNJA3.450e-2051.5810 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT
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