FC876838 | Citrus Genome Database

Overview


Name	FC876838
Unique Name	FC876838
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	703

Libraries


Library Name	Type
EHR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROMT (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+     +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103

HSP 2 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROM1 (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL1A) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 47/98 (47.96%), Postives = 70/98 (71.43%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   ++ G+ V+YSKYAG D K GSD   Y+     +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103

HSP 2 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROM4 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9211) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V  VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+     +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103

HSP 2 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROM2 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9215) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+     +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103

HSP 2 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+     +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103

HSP 2 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_CLAM3 (10 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 2

Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +KPL DR+ I+  EAE+TTA GL++ + +KEKP  G V+AVGPG +D+ GNR PL +A G+ V+YSKY G + K  DG + +   A +V+AV+
Sbjct:    5 IKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-YDGQDLLVLSARDVLAVI 96

HSP 2 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 2

Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            SIKPL DR++++    E+ T  G+ +P  A+ KPQ GEVVAVG G+      +  LD++V  G +VIYSKY GTE++++G + L++   DV+ ++E
Sbjct:    4 SIKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKYDGQDLLVLSARDVLAVIE 97

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVL 682
            +  +KPL DRVF+K++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+     +++AV+
Sbjct:    8 VSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VKI   EEKT GGI LP  A+ KPQ GEVV VG GK+          V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+     +++AV++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103

HSP 2 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV +K+   EEKT GGI LP  A+ KPQ GEV  VG GK           V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_LEIXX (10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 2

Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +KPL DR+ IK  EAE+TTA GL++ + +KEKP  G V AVGPG +D+ GNR PL +A G+ V+YSKY G + K   G +Y+   A +V+AV+
Sbjct:    5 IKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-FGGQDYLVLSARDVLAVV 96

HSP 2 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 2

Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            SIKPL DR+++K    E+ T  G+ +P  A+ KPQ G V AVG G+      +  LD++V  G +VIYSKY GTE++F G ++L++   DV+ ++
Sbjct:    4 SIKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKFGGQDYLVLSARDVLAVV 96

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 45/94 (47.87%), Postives = 67/94 (71.28%), Query Frame = 2

Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMA 676
            +  +KPL DR+F+KV+ AEE TAGG+LL + ++EKP IG V+AVGPG  +++G+R  L +  G+ V+YSKYAG D K S G +Y+     +++A
Sbjct:    8 VSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLS-GEDYVLLSEKDILA 100

HSP 2 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 2

Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 373
            +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ GEVVAVG GK     ++ ++ VK G +V+YSKYAGT+++ +G +++++ E D++
Sbjct:    9 STVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99

The following BLAST results are available for this feature:

BLAST of FC876838 vs. ExPASy Swiss-Prot

BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_PROMT	3.450e-20	47.96	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM1	3.450e-20	47.96	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM4	4.506e-20	47.96	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM2	4.506e-20	46.39	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_PROM0	4.506e-20	46.39	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_CLAM3	5.884e-20	49.46	10 kDa chaperonin OS=Clavibacter michiganensis sub...	[more]
CH10_SYNS3	7.685e-20	46.39	10 kDa chaperonin OS=Synechococcus sp. (strain CC9...	[more]
CH10_PROMA	7.685e-20	47.96	10 kDa chaperonin OS=Prochlorococcus marinus GN=gr...	[more]
CH10_LEIXX	7.685e-20	50.54	10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN...	[more]
CH10_CYAA5	7.685e-20	47.87	10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT