FC876838
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19 Identity = 45/98 (45.92%), Postives = 71/98 (72.45%), Query Frame = 2 Query: 395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685 + + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG +++G+R+ + G+ V+YSKYAG D K G+D +Y+ +++AV++ Sbjct: 8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103 HSP 2 Score: 87.0409 bits (214), Expect = 1.039e-16 Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2 Query: 104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +++ PLGDRV VK+ EEKT GGI LP A+ KPQ GE+VAVG GK VK G +V+YSKYAGT+++ +++++ E D++ ++ Sbjct: 9 STVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19 Identity = 45/98 (45.92%), Postives = 71/98 (72.45%), Query Frame = 2 Query: 395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVLS 685 + + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG +++G+R+ + G+ V+YSKYAG D K G+D +Y+ +++AV++ Sbjct: 8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103 HSP 2 Score: 87.0409 bits (214), Expect = 1.039e-16 Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 2 Query: 104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +++ PLGDRV VK+ EEKT GGI LP A+ KPQ GE+VAVG GK VK G +V+YSKYAGT+++ +++++ E D++ ++ Sbjct: 9 STVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV 102
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_BEUC1 (10 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groS PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19 Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 2 Query: 404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682 +KPL DR+ +K EAE+TTA GL++ + +KEKP G V+A+GPG +D+ GNR P+ +A G+ V+YSKY G + K + G Y+ A +V+AV+ Sbjct: 5 IKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYA-GQEYLILSARDVLAVV 96 HSP 2 Score: 79.7221 bits (195), Expect = 1.658e-14 Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385 SIKPL DR++VK E+ T G+ +P A+ KPQ GEV+A+G G+ ++ + V G VIYSKY GTE+++ G +LI+ DV+ +++ Sbjct: 4 SIKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYAGQEYLILSARDVLAVVQ 97
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 44/97 (45.36%), Postives = 68/97 (70.10%), Query Frame = 2 Query: 395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685 + +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG +++G+R+ + G+ V+YSKYAG D K S Y+ +++AV++ Sbjct: 8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLST-DEYVLLSEKDILAVVN 103 HSP 2 Score: 85.1149 bits (209), Expect = 3.947e-16 Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 2 Query: 104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +++KPLGDRV VK+ EEKT GGI LP A+ KPQ GEVV VG GK V G +V+YSKYAGT+++ + ++++ E D++ ++ Sbjct: 9 STVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLSTDEYVLLSEKDILAVV 102
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = 2 Query: 395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682 + +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V VGPG L+++G+R+ ++ G+ V+YSKYAG D K G Y+ +++AV+ Sbjct: 8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102 HSP 2 Score: 86.6557 bits (213), Expect = 1.357e-16 Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2 Query: 104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +++KPLGDR+ +K+ EEKT GGI LP +A+ KPQ GEV VG GK ++ V G +V+YSKYAGT+++ G ++++ E D++ ++ Sbjct: 9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_NOCSJ (10 kDa chaperonin OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groS PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 2 Query: 401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685 ++KPL DR+ +K +AE+TTA GL++ + +KEKP G V+A+GPG +D+ GNR PL + G+ V+YSKY G + K + G Y+ A +V+AV+S Sbjct: 4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTVGDKVIYSKYGGTEVKYA-GEEYLILSARDVLAVVS 97 HSP 2 Score: 77.7962 bits (190), Expect = 6.302e-14 Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 2 Query: 107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +IKPL DR++VK E+ T G+ +P A+ KPQ GEV+A+G G+ + LD++V G +VIYSKY GTE+++ G +LI+ DV+ ++ Sbjct: 4 NIKPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRIDDNGNRVPLDVTV--GDKVIYSKYGGTEVKYAGEEYLILSARDVLAVV 96
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCTU (10 kDa chaperonin OS=Mycobacterium tuberculosis GN=groS PE=1 SV=3) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 2 Query: 401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685 ++KPL D++ ++ EAE TTA GL++ + +KEKP GTV+AVGPG DE+G ++ PL +A G+TV+YSKY G + K +G Y+ A +V+AV+S Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99 HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +IKPL D++LV+ E T G+ +P A+ KPQ G VVAVG G+ G+ ++ + V G VIYSKY GTE+++NG +LI+ DV+ ++ Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCTA (10 kDa chaperonin OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=groS PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 2 Query: 401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685 ++KPL D++ ++ EAE TTA GL++ + +KEKP GTV+AVGPG DE+G ++ PL +A G+TV+YSKY G + K +G Y+ A +V+AV+S Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99 HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +IKPL D++LV+ E T G+ +P A+ KPQ G VVAVG G+ G+ ++ + V G VIYSKY GTE+++NG +LI+ DV+ ++ Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCS2 (10 kDa chaperonin OS=Mycobacterium smegmatis GN=groS PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 2 Query: 401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685 ++KPL D++ ++ EAE TTA GL++ + +KEKP GTV+AVGPG DE+G ++ PL +A G+TV+YSKY G + K +G Y+ A +V+AV+S Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99 HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +IKPL D++LV+ E T G+ +P A+ KPQ G VVAVG G+ G+ ++ + V G VIYSKY GTE+++NG +LI+ DV+ ++ Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCBT (10 kDa chaperonin OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=groS PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19 Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 2 Query: 401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685 ++KPL D++ ++ EAE TTA GL++ + +KEKP GTV+AVGPG DE+G ++ PL +A G+TV+YSKY G + K +G Y+ A +V+AV+S Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99 HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15 Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 Query: 107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382 +IKPL D++LV+ E T G+ +P A+ KPQ G VVAVG G+ G+ ++ + V G VIYSKY GTE+++NG +LI+ DV+ ++ Sbjct: 5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98 The following BLAST results are available for this feature:
BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bpback to top |