FC876838

Overview
NameFC876838
Unique NameFC876838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DELAS (10 kDa chaperonin OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K + + ++VK G +V++ KY+G  ++ +G   L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRLENETKTASGIVIPENAAEKPDQGEVLAVGPGKKNDKGEVIALNVKVGDRVLFGKYSGQTVKVHGDELLVMKEDDLFAVVE 95          

HSP 2 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +L+PL+DRV +K  E E  TA G+++ E + EKP  G V+AVGPG  +++G    L++  G+ V++ KY+G   K   G   +  K  ++ AV+
Sbjct:    2 NLRPLHDRVIVKRLENETKTASGIVIPENAAEKPDQGEVLAVGPGKKNDKGEVIALNVKVGDRVLFGKYSGQTVK-VHGDELLVMKEDDLFAVV 94          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_TREPR (10 kDa chaperonin OS=Tremblaya princeps GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            + I+PLGDRV+VK    E KT  GI +P +A  K   G VVA+G GK   + A++ + V+ G +V++ KYAG  ++ +  + +++RE+D+V ++E
Sbjct:    2 SKIRPLGDRVVVKRSEDETKTPCGIVIPDSAAEKQDQGTVVALGPGKKDSEGARVPMEVRLGDRVLFGKYAGQSIKVDDEDLMVMREEDIVAVIE 96          

HSP 2 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 34/93 (36.56%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            ++PL DRV +K +E E  T  G+++ +++ EK   GTV+A+GPG  D EG R P+ +  G+ V++ KYAG   K  D  + +  +  +++AV+
Sbjct:    4 IRPLGDRVVVKRSEDETKTPCGIVIPDSAAEKQDQGTVVALGPGKKDSEGARVPMEVRLGDRVLFGKYAGQSIK-VDDEDLMVMREEDIVAVI 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THICR (10 kDa chaperonin OS=Thiomicrospira crunogena (strain XCL-2) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHL-IVREDDVVGILE 385
            +IKPL DRV+V+    ++++ GGI LP +AQ K   GEVVAVG GK       + ++VK G +V++ +Y+G E++ +    L ++REDD++ I+E
Sbjct:    2 NIKPLHDRVVVRQVEEQKESTGGILLPGSAQEKENLGEVVAVGPGKAADNGSIIPMTVKVGDKVMFGQYSGQEVKDDAGKPLKVMREDDIIAIVE 96          

HSP 2 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 30/94 (31.91%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            ++KPL+DRV ++  E ++ + GG+LL  +++EK ++G V+AVGPG   + G+  P+++  G+ VM+ +Y+G + K   G      +  +++A++
Sbjct:    2 NIKPLHDRVVVRQVEEQKESTGGILLPGSAQEKENLGEVVAVGPGKAADNGSIIPMTVKVGDKVMFGQYSGQEVKDDAGKPLKVMREDDIIAIV 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MARMS (10 kDa chaperonin OS=Marinomonas sp. (strain MWYL1) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +I+PL DRV+V+ K  E  T  GI LP +A+ KP  GEV+AVG G+      +  ++VK G  V++ +Y+G  ++  G   LI++ED++ GI+E
Sbjct:    2 NIRPLHDRVVVRRKEEETTTASGIVLPGSAKEKPTQGEVLAVGTGRIQSNGDVQALAVKVGDTVLFGQYSGQTVKIEGDELLIMKEDEIYGIVE 95          

HSP 2 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 33/94 (35.11%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +++PL+DRV ++  E E TTA G++L  ++KEKP+ G V+AVG G +   G+ + L++  G+TV++ +Y+G   K  +G   +  K  E+  ++
Sbjct:    2 NIRPLHDRVVVRRKEEETTTASGIVLPGSAKEKPTQGEVLAVGTGRIQSNGDVQALAVKVGDTVLFGQYSGQTVK-IEGDELLIMKEDEIYGIV 94          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MACCJ (10 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 36/93 (38.71%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKP  +RV I+  E E TTA G++LT+++KEK + GTV+AVG G +   G R  + ++ G+ V+Y  + G + K  D  +YI  K  +++A++
Sbjct:    2 LKPYGNRVVIQKTERETTTASGIVLTDSAKEKTNEGTVVAVGTGRILNNGERVEIGVSVGDRVVYEPFGGTEVKTGD-ESYIVLKEEDIIAIV 93          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_WOLTR (10 kDa chaperonin OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 2
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E      ++++E D++ I++
Sbjct:    5 SLSVLDDSVL--IKPINEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERIALTVKAGDKVFYRQWAGTEIEHGSEKLIVMKESDILAIIK 96          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PSEPF (10 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf0-1) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 35/93 (37.63%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            L+PL+DRV I+ +E E+ TAGG++L  ++ EK + G ++AVGPG   E G  + LS+  G+ V++  Y+G++    DG + +    +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEEKKTAGGIVLPGSAAEKANHGEILAVGPGKALESGEVRALSVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVI 95          

HSP 2 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 385
            ++PL DRV+++    E+KT GGI LP +A  K   GE++AVG GK +   ++  +SVK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEEKKTAGGIVLPGSAAEKANHGEILAVGPGKALESGEVRALSVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVIE 96          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_ANASL (10 kDa chaperonin OS=Anabaena sp. (strain L31) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 36/94 (38.30%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +++KPLGDRV VK+ +  EK    ++ P  A+ KPQ GEVVA+G GK     ++ ++ VK G  ++YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKV-SASEKRPRRLYFPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDLLLYSKYAGTDVKLGTEEYVLLSEKDILAMV 101          

HSP 2 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 36/97 (37.11%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIAFKASEVMAVL 682
            +  +KPL DRVF+KV+ A E     L   + +KEKP +G V+A+G G  +++G+R+ L +  G+ ++YSKYAG D K G++   Y+     +++A++
Sbjct:    8 VSTVKPLGDRVFVKVS-ASEKRPRRLYFPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDLLLYSKYAGTDVKLGTE--EYVLLSEKDILAMV 101          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PSEPG (10 kDa chaperonin OS=Pseudomonas putida (strain GB-1) GN=groS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 35/93 (37.63%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G V+AVG G + E G  + L++  G+ V++  Y+G++    DG + +    +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRILENGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVI 95          

HSP 2 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 385
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRILENGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVIE 96          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_PSEPU (10 kDa chaperonin OS=Pseudomonas putida GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 34/93 (36.56%), Postives = 61/93 (65.59%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            L+PL+DRV I+ +E E  TAGG++L  ++ EKP+ G ++AVG G + E G  + L++  G+ V++  Y+G++    DG + +    +E++AV+
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEIVAVGTGRILENGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVI 95          

HSP 2 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 2
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 385
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEIVAVGTGRILENGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVIE 96          
The following BLAST results are available for this feature:
BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_DELAS5.335e-1340.4310 kDa chaperonin OS=Delftia acidovorans (strain D... [more]
CH10_TREPR6.967e-1338.9510 kDa chaperonin OS=Tremblaya princeps GN=groS PE... [more]
CH10_THICR6.967e-1341.0510 kDa chaperonin OS=Thiomicrospira crunogena (str... [more]
CH10_MARMS6.967e-1340.4310 kDa chaperonin OS=Marinomonas sp. (strain MWYL1... [more]
CH10_MACCJ6.967e-1338.7110 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH10_WOLTR9.099e-1339.3610 kDa chaperonin OS=Wolbachia sp. subsp. Brugia m... [more]
CH10_PSEPF9.099e-1337.6310 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH10_ANASL9.099e-1338.3010 kDa chaperonin OS=Anabaena sp. (strain L31) GN=... [more]
CH10_PSEPG1.188e-1237.6310 kDa chaperonin OS=Pseudomonas putida (strain GB... [more]
CH10_PSEPU1.552e-1236.5610 kDa chaperonin OS=Pseudomonas putida GN=groS PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT
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