FC876838

Overview
NameFC876838
Unique NameFC876838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SHEB2 (10 kDa chaperonin OS=Shewanella baltica (strain OS223) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 34/94 (36.17%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +++PL+DRV +K  E E T+AGG++LT ++ EK + G ++AVG G + E G  KPL +  G+ V++++  G   +  DG   +    +++MAV+
Sbjct:    2 NIRPLHDRVIVKRLEVESTSAGGIVLTGSAAEKSTRGEILAVGNGRILENGTVKPLDVKVGDVVIFNEGYGVKKEKIDGQEVLILSEADLMAVV 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_HAEPS (10 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            I+PL D+V++K + +E K+ GGI L  +A TK   G V+AVG G+T+     L ++VK G  VI+++Y   E + +G   LI+ ED+++ I+E
Sbjct:    3 IRPLHDKVILKREEIETKSAGGIVLTGSAATKSTRGTVIAVGNGRTLDNGTVLPLNVKVGDVVIFNEYGVKEEKIDGETVLILSEDNILAIVE 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_CHRSD (10 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAV 679
            ++PL+DRV ++  E E+ TAGG++L   ++EKP+ G V+AVG G + E G  +PL +  G+TV++    G + +  DG   +    S+++AV
Sbjct:    3 IRPLHDRVVVRRVEEEQKTAGGIVLPGNAQEKPTRGEVLAVGNGRILESGEVRPLDVKVGDTVIFKDGFGVEKQKIDGEEVLIMSESDILAV 94          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH101_VIBVY (10 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 32/94 (34.04%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +++PL+DRV ++  E E  +AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+TV++++  G   +  DG   +    +++MA++
Sbjct:    2 NIRPLHDRVIVERQEVESKSAGGIVLTGSAAEKSTRGVVLAVGKGRILENGTVQPLDVKVGDTVIFAESYGTKTEKIDGKEVLIMSENDIMAIV 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH101_VIBVU (10 kDa chaperonin 1 OS=Vibrio vulnificus GN=groS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 32/94 (34.04%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +++PL+DRV ++  E E  +AGG++LT ++ EK + G V+AVG G + E G  +PL +  G+TV++++  G   +  DG   +    +++MA++
Sbjct:    2 NIRPLHDRVIVERQEVESKSAGGIVLTGSAAEKSTRGVVLAVGKGRILENGTVQPLDVKVGDTVIFAESYGTKTEKIDGKEVLIMSENDIMAIV 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THEAB (10 kDa chaperonin OS=Thermosipho africanus (strain TCF52B) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  116 PLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            PLG R+L+K    E++T+GGI LP  A+ KP   E+VAVG  +       D+ +  G +VI+SKY+GTE++    +++I+  +D++  +E
Sbjct:    5 PLGSRLLIKPIQEEKRTEGGIVLPDTAKEKPMKAEIVAVGNLEDA-----DVDLHVGDKVIFSKYSGTEIKIEEEDYIIIDVEDILAKIE 89          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SHESH (10 kDa chaperonin OS=Shewanella sediminis (strain HAW-EB3) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 35/95 (36.84%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +++PL+DRV +K +E E  +AGG++LT ++ E+ S G V+AVG G + E G+ +PL +  G+ V++++  G   +  DG   +    S++MAV+S
Sbjct:    2 NIRPLHDRVIVKRSEVESKSAGGIVLTGSAAEQSSRGEVLAVGNGRILENGSVQPLDVKVGDIVIFNEGYGVKKEKIDGEEVLILSESDLMAVVS 96          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SHEPA (10 kDa chaperonin OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 35/94 (37.23%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +++PL+DRV +K +E E  +AGG++LT ++ E+ S G V+AVG G + E GN  PL +  G+ V++++  G   +  DG   +    S++MAV+
Sbjct:    2 NIRPLHDRVIVKRSEVESKSAGGIVLTGSAAEQSSRGEVLAVGNGRILENGNLMPLDVKVGDIVIFNEGYGVKKEKIDGEEVLILSESDLMAVV 95          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_NEOSM (10 kDa chaperonin OS=Neorickettsia sennetsu (strain Miyayama) GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 33/92 (35.87%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAV 679
            LK L+D+V I+  E E+  AGG+ + +++K+KP++G V+AVG G  +  G  +P+ +  G+ V+Y K+AG++ +  DG  Y+  K ++++A+
Sbjct:    5 LKMLHDQVLIRPHE-EKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVE-HDGVEYVVMKETDIIAI 94          
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_EHRSE (10 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 33/92 (35.87%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAV 679
            LK L+D+V I+  E E+  AGG+ + +++K+KP++G V+AVG G  +  G  +P+ +  G+ V+Y K+AG++ +  DG  Y+  K ++++A+
Sbjct:    5 LKMLHDQVLIRPHE-EKDGAGGIYIPDSAKKKPTMGLVVAVGAGAKNSNGTFQPVCVKEGDIVLYRKWAGSEVE-HDGVEYVVMKETDIIAI 94          
The following BLAST results are available for this feature:
BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_SHEB21.314e-1136.1710 kDa chaperonin OS=Shewanella baltica (strain OS... [more]
CH10_HAEPS1.314e-1139.7810 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH10_CHRSD1.314e-1136.9610 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH101_VIBVY1.314e-1134.0410 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]
CH101_VIBVU1.314e-1134.0410 kDa chaperonin 1 OS=Vibrio vulnificus GN=groS1 ... [more]
CH10_THEAB1.716e-1137.7810 kDa chaperonin OS=Thermosipho africanus (strain... [more]
CH10_SHESH1.716e-1136.8410 kDa chaperonin OS=Shewanella sediminis (strain ... [more]
CH10_SHEPA1.716e-1137.2310 kDa chaperonin OS=Shewanella pealeana (strain A... [more]
CH10_NEOSM1.716e-1135.8710 kDa chaperonin OS=Neorickettsia sennetsu (strai... [more]
CH10_EHRSE1.716e-1135.8710 kDa chaperonin OS=Ehrlichia sennetsu GN=groS PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT
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