FC876838

Overview
NameFC876838
Unique NameFC876838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCMM (10 kDa chaperonin OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +A G+TV+YSKY G + K   G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIK-YGGEEYLILSARDVLAVVS 99

HSP 2 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYGGEEYLILSARDVLAVV 98
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_GEOSL (10 kDa chaperonin OS=Geobacter sulfurreducens GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +++PL DR+LVK    E KT GGIF+P  A+ KPQ GE+VAVG GK     K + + +K G +V++ KYAGT+++  G   LI+REDD++G++E
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIKIEGQEFLIMREDDILGVIE 95

HSP 2 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +L+PL DR+ +K  E E  TAGG+ + + +KEKP  G ++AVG G   E+G   P+ +  G+ V++ KYAG D K  +G  ++  +  +++ V+
Sbjct:    2 NLRPLQDRILVKRIEEETKTAGGIFIPDTAKEKPQRGEIVAVGNGKKTEDGKVIPVDLKVGDKVLFGKYAGTDIK-IEGQEFLIMREDDILGVI 94
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_GEOSF (10 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 2 
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            ++P+ DR++VK    E KT GGI++P  A+ KPQ GEVVAVG GK     K L + VK G +V++ KY+GTE++  G ++LI+REDD++G++E
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVKVEGQDYLIMREDDILGVIE 95

HSP 2 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            L+P+ DR+ +K  E E  TAGG+ + E +KEKP  G V+AVG G   E+G   PL +  G+ V++ KY+G + K  +G +Y+  +  +++ V+
Sbjct:    3 LRPMQDRIIVKRVEEETKTAGGIYIPETAKEKPQEGEVVAVGNGKRTEDGKILPLDVKVGDKVLFGKYSGTEVK-VEGQDYLIMREDDILGVI 94
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_RHOSR (10 kDa chaperonin OS=Rhodococcus sp. (strain RHA1) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 44/95 (46.32%), Postives = 68/95 (71.58%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVG G ++E+GNR P+ +  G+TV+YSKY G + K + G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYA-GQEYLILSARDVLAVVS 98

HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVGEG+   +  ++ + VK G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYAGQEYLILSARDVLAVV 97
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_RHOOB (10 kDa chaperonin OS=Rhodococcus opacus (strain B4) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 44/95 (46.32%), Postives = 68/95 (71.58%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVG G ++E+GNR P+ +  G+TV+YSKY G + K + G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYA-GQEYLILSARDVLAVVS 98

HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVGEG+   +  ++ + VK G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYAGQEYLILSARDVLAVV 97
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_RHOE4 (10 kDa chaperonin OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 44/95 (46.32%), Postives = 68/95 (71.58%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVG G ++E+GNR P+ +  G+TV+YSKY G + K + G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYA-GQEYLILSARDVLAVVS 98

HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVGEG+   +  ++ + VK G  VIYSKY GTE+++ G  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGEGRVNEQGNRIPVDVKEGDTVIYSKYGGTEIKYAGQEYLILSARDVLAVV 97
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYXXD (10 kDa chaperonin OS=Myxococcus xanthus (strain DK 1622) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 2 
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            I+PL DR++VK    E KT GG+F+P  A+ KP  G+V+AVG GK     K+  + +K G  +++SKYAGTE++ +G  HLI+RE+DV+G++E
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIKLDGEEHLILREEDVLGVIE 95

HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            ++PL DR+ +K    E  T GGL + + +KEKP  G VIAVG G + E+G  +PL I  G+T+++SKYAG + K  DG  ++  +  +V+ V+
Sbjct:    3 IRPLQDRLIVKRVAEENKTKGGLFIPDTAKEKPLEGKVIAVGNGKVQEDGKVRPLDIKAGDTILFSKYAGTEIK-LDGEEHLILREEDVLGVI 94
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 43/96 (44.79%), Postives = 66/96 (68.75%), Query Frame = 2 
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP IG ++ VGPG  +++G+R    +  G+ V+YSKYAG D K   G +Y+     +++AV+
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILAVV 102

HSP 2 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 2 
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GE+V VG GK     ++ +  VK G +V+YSKYAGT+++  G +++++ E D++ +++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDILAVVD 103
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_CHLP8 (10 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            ++KPL DRV+VK    EEKT GG+++P   + KPQ GEVVAVGEGK     +L  + VK G +V+Y KY+GTE++    ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGEGKVADNGQLVQMQVKVGDKVLYGKYSGTEVQVEAEDYLIMRESDIFAIL 94

HSP 2 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVG G + + G    + +  G+ V+Y KY+G + +  +  +Y+  + S++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEVVAVGEGKVADNGQLVQMQVKVGDKVLYGKYSGTEVQ-VEAEDYLIMRESDIFAIL 94
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.814e-19
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 2 
Query:  395 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMA 676
            +  +KPL DRVF+KV+ AEE TAGG+LL + +KEKP IG V+ VGPG  +++G   P+ +  G+ V+YSKYAG D K   G +Y+     +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIK-LGGDDYVLLTEKDILA 100

HSP 2 Score: 90.5077 bits (223), Expect = 9.395e-18
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 2 
Query:  104 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 373
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK         + VK G +V+YSKYAGT+++  G +++++ E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99
The following BLAST results are available for this feature:
BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_MYCMM2.236e-1947.9210 kDa chaperonin OS=Mycobacterium marinum (strain... [more]
CH10_GEOSL2.236e-1947.8710 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH10_GEOSF2.236e-1948.3910 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH10_RHOSR2.920e-1946.3210 kDa chaperonin OS=Rhodococcus sp. (strain RHA1)... [more]
CH10_RHOOB2.920e-1946.3210 kDa chaperonin OS=Rhodococcus opacus (strain B4... [more]
CH10_RHOE42.920e-1946.3210 kDa chaperonin OS=Rhodococcus erythropolis (str... [more]
CH10_MYXXD2.920e-1947.3110 kDa chaperonin OS=Myxococcus xanthus (strain DK... [more]
CH10_CYAP82.920e-1944.7910 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_CHLP82.920e-1949.4610 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH10_SYNY33.814e-1946.8110 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT
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