FC876838

Overview
NameFC876838
Unique NameFC876838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCPA (10 kDa chaperonin OS=Mycobacterium paratuberculosis GN=groS PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G  ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCGI (10 kDa chaperonin OS=Mycobacterium gilvum (strain PYR-GCK) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 44/96 (45.83%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL ++ G+ V+YSKY G + K  +G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G+ ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCAV (10 kDa chaperonin OS=Mycobacterium avium GN=groS PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G  ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_MYCA1 (10 kDa chaperonin OS=Mycobacterium avium (strain 104) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 45/96 (46.88%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+   A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99

HSP 2 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK--TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +IKPL D++LV+    E  T  G+ +P  A+ KPQ G VVAVG G+    G  ++ + V  G  VIYSKY GTE+++NG  +LI+   DV+ ++
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIKYNGEEYLILSARDVLAVV 98
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 44/92 (47.83%), Postives = 68/92 (73.91%), Query Frame = 2 
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            IKPLGDRV+++I   EEKT  GI LP  A+ KPQ G+VVAVG+G+ +    ++   V+ G ++I+SKYAGTE++++G  +LI+RE D++ ++
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93

HSP 2 Score: 82.4185 bits (202), Expect = 2.558e-15
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +KPL DRV I++ E EE TA G++L + +KEKP  G V+AVG G + + G R    +  G+ +++SKYAG + K  DG  Y+  + S+++AV+
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVK-YDGKEYLILRESDILAVI 93
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_BACSK (10 kDa chaperonin OS=Bacillus clausii (strain KSM-K16) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 2 
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +KPLGDR++++    EEKT  GI LP +A+ KPQ G+VVAVG G+ T    K+ + VK G  +I+SKYAGTE+++ G  +LI+RE DV+ I+
Sbjct:    2 LKPLGDRIIIEQIQSEEKTASGIVLPDSAKEKPQEGKVVAVGTGRVTDNGEKVALEVKEGDSIIFSKYAGTEVKYEGTEYLILRESDVLAII 93

HSP 2 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 38/93 (40.86%), Postives = 65/93 (69.89%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKPL DR+ I+  ++EE TA G++L +++KEKP  G V+AVG G + + G +  L +  G+++++SKYAG + K  +GT Y+  + S+V+A++
Sbjct:    2 LKPLGDRIIIEQIQSEEKTASGIVLPDSAKEKPQEGKVVAVGTGRVTDNGEKVALEVKEGDSIIFSKYAGTEVK-YEGTEYLILRESDVLAII 93
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_BACLD (10 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 42/92 (45.65%), Postives = 68/92 (73.91%), Query Frame = 2 
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G+VVA G G+ +    ++ + VK G ++I+SKYAGTE+++ G ++LI+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKVVAAGSGRVLESGERVALEVKTGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93

HSP 2 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 41/93 (44.09%), Postives = 65/93 (69.89%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKPL DRV I++ E+EE TA G++L +++KEKP  G V+A G G + E G R  L +  G+ +++SKYAG + K  +GT+Y+  + S+++AV+
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKVVAAGSGRVLESGERVALEVKTGDRIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_ARTCA (10 kDa chaperonin OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 44/93 (47.31%), Postives = 67/93 (72.04%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +KPL DR+ ++  EAE+TTA GLL+ ++++EKP  G V+AVGPG   E+GNR P+ +A G+ V+YSKY G + K + GT Y+   A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLLIPDSAQEKPQEGEVVAVGPGRF-EDGNRVPVDVAVGDVVIYSKYGGTEVK-TGGTEYLVLSARDVLAIV 95

HSP 2 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            SIKPL DR++V+    E+ T  G+ +P +AQ KPQ GEVVAVG G+     ++ + V  G  VIYSKY GTE++  G  +L++   DV+ I+
Sbjct:    4 SIKPLEDRIVVRPLEAEQTTASGLLIPDSAQEKPQEGEVVAVGPGRFEDGNRVPVDVAVGDVVIYSKYGGTEVKTGGTEYLVLSARDVLAIV 95
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_RENSM (10 kDa chaperonin OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 41/93 (44.09%), Postives = 66/93 (70.97%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +KPL DR+ ++  +AE+TTA GL++ +++KEKP  G V+AVGPG +D+ GNR P+ +A G+ V+YSKY G + K + G   +   A +V+A++
Sbjct:    5 IKPLEDRIVVRQLDAEQTTASGLVIPDSAKEKPQEGEVVAVGPGRVDDNGNRVPVDVAVGDVVLYSKYGGTEVK-TGGEELLVLSARDVLAIV 96

HSP 2 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 382
            SIKPL DR++V+    E+ T  G+ +P +A+ KPQ GEVVAVG G+      ++ + V  G  V+YSKY GTE++  G   L++   DV+ I+
Sbjct:    4 SIKPLEDRIVVRQLDAEQTTASGLVIPDSAKEKPQEGEVVAVGPGRVDDNGNRVPVDVAVGDVVLYSKYGGTEVKTGGEELLVLSARDVLAIV 96
[Close]
BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DESPS (10 kDa chaperonin OS=Desulfotalea psychrophila GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 2 
Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            I+PL DR+LVK    EEKT GGI +P +A+ KP  G+VVAVG GK      ++ + VK G  V++SKY GT+++ +G + LI+REDD++GI+E
Sbjct:    3 IRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVKLDGEDFLIMREDDILGIME 95

HSP 2 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 36/93 (38.71%), Postives = 63/93 (67.74%), Query Frame = 2 
Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            ++PLNDR+ +K    EE TAGG+++ +++KEKP+ G V+AVGPG + + G R  L +  G+ V++SKY G D K  DG +++  +  +++ ++
Sbjct:    3 IRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVK-LDGEDFLIMREDDILGIM 94
The following BLAST results are available for this feature:
BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_MYCPA1.110e-1846.8810 kDa chaperonin OS=Mycobacterium paratuberculosi... [more]
CH10_MYCGI1.110e-1845.8310 kDa chaperonin OS=Mycobacterium gilvum (strain ... [more]
CH10_MYCAV1.110e-1846.8810 kDa chaperonin OS=Mycobacterium avium GN=groS P... [more]
CH10_MYCA11.110e-1846.8810 kDa chaperonin OS=Mycobacterium avium (strain 1... [more]
CH10_BACTR1.110e-1847.8310 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH10_BACSK1.110e-1850.0010 kDa chaperonin OS=Bacillus clausii (strain KSM-... [more]
CH10_BACLD1.110e-1845.6510 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH10_ARTCA1.110e-1847.3110 kDa chaperonin OS=Arthrobacter chlorophenolicus... [more]
CH10_RENSM1.449e-1844.0910 kDa chaperonin OS=Renibacterium salmoninarum (s... [more]
CH10_DESPS1.449e-1849.4610 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT
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