FC876852

Overview
NameFC876852
Unique NameFC876852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 68/280 (24.29%), Postives = 125/280 (44.64%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSD-----SNETFKDLTSKSYPFAFMLASAGYLLTMFGDCII-------NFVIKQGSKKETRVDVEEEKSEEVG---------TDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMG--IALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDA----TTQGHIADWIYAISMGLACGVFIYVAINHLIAKGF-KPQNKCYFDAPFFKFLAVLSGVGVIAVVMIW 812
            N+ F ++   FA GV L T  +H L D     S+   +D T+  +PFA  +A    + T+  D          +F    GSK+   V  EEE +  V          T G+    R   +    +L + +  HSV  GI++G S +       +  +S H+ F  + +G  I+L  M  K   L+       F++++P+G+GIG+ + +      +   A  +  +    + G+ IY+++  L+A  F  P+ +         +L+++ G G ++++ IW
Sbjct:   82 NDIFFMVKA-FAAGVILCTGFVHILPDAFERLSSPCLEDTTAGKFPFAGFVAMLSAMGTLMIDTFATGYYKRQHFSNNHGSKQVNVVVDEEEHAGHVHIHTHASHGHTHGSTELIRRRIVSQ--VLEIGIVVHSVIIGISLGASQSIDTIKPLMAALSFHQFFEGLGLGGCISLADMKSKSTVLMAT----FFSVTAPLGIGIGLGMSSGLGYRKESKEAIMVEGMLNAASAGILIYMSLVDLLATDFMNPRLQSNLWLHLAAYLSLVLGAGSMSLLAIW 354          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 70/298 (23.49%), Postives = 129/298 (43.29%), Query Frame = 3
Query:    9 LVSTFAGGVSPYFYRWNESFL-------LLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK-----SYPFAFMLASAGYLLTMFGDCIINFVIK---------------QGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLAC--GVFIYVAINHLIAKGFK-PQNKCYFDAPFFKFLAVLSGVGVIAVVMIW 812
            L+++  G  +P F R N SFL        +   FA G+ LGT  MH L DS E    +  +      +PF+  LA    L+T+  D +   +                  G   +  + ++E+ S       N    R   I   ++L L +  HSV  G+++G ++        +  +  H++F  + +G  +L+   +   +     +F FA+++P G+ +GIA+    Q +    +  + +  AC  G+ IY+A+  L+A  F  P+ +      F   +A L G G ++++  W
Sbjct:   52 LIASMIGVGAPLFSR-NVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFLAMLSGLITLAIDSMATSLYTSKNAVGIMPHGHGHGHGPANDVTLPIKEDDS------SNAQLLRYRVI--AMVLELGIIVHSVVIGLSLGATSDTCTIKGLIAALCFHQMFEGMGLGGCILQ--AEYTNMKKFVMAFFFAVTTPFGIALGIALSTVYQDNSPKALITVGLLNACSAGLLIYMALVDLLAAEFMGPKLQGSIKMQFKCLIAALLGCGGMSIIAKW 338          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A3_HUMAN (Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 64/252 (25.40%), Postives = 113/252 (44.84%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTS-----KSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEE-EKSEEVGTD------------GNPVFFRTSSIGDTIL--------------LILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAK 713
            ++  L L   F GGVFL T     L    E  + + S       YP A  +   G+ +T+F + +I    K+   K + +D+E      +VG+D            G+ ++      G ++               L  AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI++ R     P    A  +   +   P+G+G+G+ I+ + QG        +  GLA G F+++    ++AK
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLQKVLSLGHISTDYPLAETILLLGFFMTVFLEQLILTFRKE---KPSFIDLETFNAGSDVGSDSEYESPFMGGARGHALYVEPHGHGPSLSVQGLSRASPVRLLSLAFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAVHETLVAVALGISMAR--SAMPLRDAAKLAVTVSAMIPLGIGLGLGIE-SAQGVPGSVASVLLQGLAGGTFLFITFLEILAK 284          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A3_BOVIN (Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 65/251 (25.90%), Postives = 111/251 (44.22%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT-----SKSYPFAFMLASAGYLLTMFGDCIINFVIKQ----------GSKKETRVDVEEEKSEEVGTDGNPVF--------------FRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISS--PIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAK 713
            ++  L L   F GGVFL T     L    E  K++      S  YP A  +   G+ +T+F + ++    K+           +  +   D E E     G  G+ ++                 SS    + L+ AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI + R        L  A   A  +S+  P+G+ +G+ I+ + QG  +     +  GLA G F++V    ++AK
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLKEVLTLAHISTDYPLAETIMLLGFFMTVFLEQLVLTFRKERPAFIDLETFNASSDAGSDSEYESPFMGGPRGHALYAEPHGHSHGLSVQELSRSSPLRLLSLVFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAIHETLVAVALGINMAR----SAMALRDAAKLAVTVSAMIPLGISLGLGIE-SAQGMPSSVASVLLQGLAGGTFLFVTFFEILAK 284          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: ZIP7_ARATH (Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 70/275 (25.45%), Postives = 120/275 (43.64%), Query Frame = 3
Query:   90 AGGVFLGTSMMHFLSDSNETFKDLTSK--------SYPFA-FMLASAGYLLTMFGDCIINFVIKQGSKKE--------------TRVDVEE--------EKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLAC--GVFIYVAINHLIA-KGFKPQNKCYFDAPFFKFLAVLSGVGVIAVVMIW 812
            A GV L T  MH L DS   F DLTSK         +PFA F+   +  L+ M     +    ++ SK+E              T+ D++         EK E+V  D      R   I    +L L +  HSV  G+A+G S  K      +  +  H++F  + +G ++L+   K     T    F F++++P G+ +G+AI           +  + +  AC  G+ IY+A+ +L+A + F P+ +         ++A  +G   ++++  W
Sbjct:   97 ASGVILATGFMHVLPDS---FDDLTSKCLPEDPWQKFPFATFITMISALLVLMIESFAMCAYARRTSKREGEVVPLENGSNSVDTQNDIQTLENGSSYVEKQEKVNEDKTSELLRNKVIAQ--ILELGIVVHSVVIGLAMGASDNKCTVQSLIAALCFHQLFEGMGLGGSILQAQFKSKTNWTMV--FFFSVTTPFGIVLGMAIQKIYDETSPTALIVVGVLNACSAGLLIYMALVNLLAHEFFGPKIQGNIKLHVLGYVATFTGAAGMSLMAKW 364          
The following BLAST results are available for this feature:
BLAST of FC876852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ZIP1_ARATH1.016e-1124.29Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
IRT1_ARATH1.327e-1123.49Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
S39A3_HUMAN3.862e-1125.40Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 P... [more]
S39A3_BOVIN3.862e-1125.90Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=... [more]
ZIP7_ARATH6.588e-1125.45Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BB09RM1 EHR Citrus clementina cDNA clone KN0AAN3BB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876852 ID=FC876852; Name=FC876852; organism=Citrus clementina; type=EST; length=831bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGTGGGGTTTTCATATATGTTGCCATCAACCA
TCTCATTGCCAAAGGGTTTAAGCCACAAAATAAATGTTACTTTGACGCTC
CTTTCTTTAAGTTTCTTGCTGTGCTTAGTGGAGTTGGAGTCATTGCAGTT
GTTATGATTTGGGATTAATCTCTTTTTATTT
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