FC876856

Overview
NameFC876856
Unique NameFC876856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length792
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10428 contig Ccv1_Contig10428:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR7_HUMAN (Solute carrier family 2, facilitated glucose transporter member 7 OS=Homo sapiens GN=SLC2A7 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 57/249 (22.89%), Postives = 110/249 (44.18%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRW-LFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +L ++ VP+++  + + F PESPR+ L    D+  A   L ++     +E E++ + + A  E R    +  L +   + +R                 I  + YY+ TI   AG ++ H +  +++     N V TI    L++  GR+ L L+   G+  S  L+    +          Y  + +I +  YIA  + G  PVP  + +E++ +  R     +   V+ ++N I+   F ++ E +G
Sbjct:  201 LLALTGVPALLQLLTLPFFPESPRYSLIQKGDEATARQALRRLRGHTDMEAELEDMRAEARAE-RAEGHLSVLHLCALRSLRWQLLSIIVLMAGQQLSGINAINYYADTIYTSAGVEAAH-SQYVTVGSGVVNIVMTITSAVLVERLGRRHLLLAGY-GICGSACLVLTVVLLFQNRVPELSY--LGIICVFAYIAGHSIGPSPVPSVVRTEIFLQSSRRAAFMVDGAVHWLTNFIIGFLFPSIQEAIG 444          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR5_PONAB (Solute carrier family 2, facilitated glucose transporter member 5 OS=Pongo abelii GN=SLC2A5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 55/251 (21.91%), Postives = 105/251 (41.83%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDV---FISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVG 775
            +LG++ VP+ +  VL+ F PESPR+L +    E A     K     R  D +D   +   +E    K   ++ V   F  + +R                 +  + YY+  I   AG    H+   ++      N V T   +++++  GR+ L L   +  +++  +L+ A              +I+++ +  Y+   A G  P+P  L +E++ +  R     +  +V+ +SN  V   F  + E +G
Sbjct:  195 LLGLTGVPAALQLVLLPFFPESPRYLLIQKKDEAA---AKKALQTLRGWDSVDREVAEIRQEDEAEKAAGFISVLKLFRMRSLRWQLLSIIVLMGGQQLSGVNAIYYYADQIYLSAGVPKEHVQ-FVTAGTGAVNVVMTFCAVFVVELLGRRLLLLLGFSICLVACCVLTAALALQDTVSWMP---YISIVCVISYVIGHALGPSPIPALLITEIFLQSSRPSAFMVGGSVHWLSNFTVGLIFPFIQEGLG 438          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: GTR5_SHEEP (Solute carrier family 2, facilitated glucose transporter member 5 OS=Ovis aries GN=SLC2A5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 62/261 (23.75%), Postives = 115/261 (44.06%), Query Frame = 2
Query:   32 MLGVSAVPSIILFVLMLFMPESPRWLFM-TSDQEKAILVLSKIYDIARLEDEIDHLSSAADEELRKNKTVIYLDV---FISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVG---TIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAF---FAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGA 784
            +LG++ +P+++  + + F PESPR+L +   D+E A   L ++     ++ EI+ +     EE R  K   ++ V   F  + +R                 +  + YY+  I   AG + +     +    AGT AV    T+  I++++  GR+ L L   +    +  +L+ A           V  W+  + +A  I++    A G  P+P  L +E++ +  R     ++ TV+ +SN  V   F  +   VG GA
Sbjct:  195 LLGLTGIPAVLQLLFLPFFPESPRYLLIQKKDEEAAKRALRRLRGWHDVDAEIEEIL----EEDRAEKAAGFISVLKLFKMRSLRWQVISIIVLMAGQQLSGVNAIYYYADQIYLSAGVKEDD----VQYVTAGTGAVNVLITVCAIFVVELMGRRFLLLLGFSVCFTACCVLTGAL------AMQDVISWMPYVSIACVISYVIGHALGPSPIPALLVTEIFLQSSRPAAYMVAGTVHWLSNFTVGLVFPFIQ--VGLGA 439          
BLAST of FC876856 vs. ExPASy Swiss-Prot
Match: EDL13_ARATH (Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 54/254 (21.26%), Postives = 112/254 (44.09%), Query Frame = 2
Query:   41 VSAVPSIILFVLMLFMPESPRWLFMTSDQEKAILVLSKIY----DIARLEDEIDHLSSAADEELRKNKTVIYLDVFISKEIRXXXXXXXXXXXXXXXXXITTVMYYSPTIVQMAGFQSNHLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFIXXXXXXXXXVYGWIALIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNCISNLIVAPTFLTVAELVGTGAPF 790
            +S VP +  FV + F+PESPRWL      +++ + L ++     DI +   EI        + L++ K   + D+F  +  R                 ++   +Y  +I + +GF +N   ++ S+      +V +++GI ++D +GR+ L   +   + +  ++   +F+                +G+ +++     G+G +PW + SE+ P   +G  G +    +  SN  V+ TF  + +   +G  F
Sbjct:  210 ISTVPCVFEFVGLFFIPESPRWLSRNGRVKESEVSLQRLRGNNTDITKEAAEIKKYM----DNLQEFKEDGFFDLFNPRYSRVVTVGIGLLVLQQLGG-LSGYTFYLSSIFKKSGFPNNVGVMMASVV----QSVTSVLGIVIVDKYGRRSLLTVATIMMCLGSLITGLSFLFQSYGLLEHYTPISTFMGVLVFLTSITIGIGGIPWVMISEMTPINIKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFF 454          
The following BLAST results are available for this feature:
BLAST of FC876856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
GTR7_HUMAN3.550e-1122.89Solute carrier family 2, facilitated glucose trans... [more]
GTR5_PONAB4.637e-1121.91Solute carrier family 2, facilitated glucose trans... [more]
GTR5_SHEEP6.056e-1123.75Solute carrier family 2, facilitated glucose trans... [more]
EDL13_ARATH7.909e-1121.26Putative sugar transporter ERD6-like 13 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CF01RM1 EHR Citrus clementina cDNA clone KN0AAN1CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876856 ID=FC876856; Name=FC876856; organism=Citrus clementina; type=EST; length=792bp
TGCACGAGGGGTCCCCGGACTATGCATATGGATGCTTGGAGTATCAGCTG
TGCCATCTATCATTCTTTTTGTCTTAATGCTTTTTATGCCGGAGTCTCCT
AGATGGCTTTTCATGACCAGTGACCAAGAAAAAGCCATTTTGGTTCTTTC
TAAGATTTATGACATTGCTCGGTTAGAAGATGAAATTGATCACCTTTCAT
CTGCTGCAGATGAAGAACTCCGAAAAAATAAAACTGTCATATACTTGGAT
GTTTTTATATCCAAAGAAATCAGACTTGCATTTCTGGCTGGGGCTGGACT
TCAGGCATTTCAGCAGTTCACTGGTATCACCACAGTCATGTACTACAGCC
CGACAATTGTCCAAATGGCTGGCTTCCAGTCCAACCACCTAGCGCTTCTC
CTATCTCTTGCTGTTGCTGGTACAAATGCAGTTGGCACAATTGTTGGAAT
TTATCTTATTGACCATTTTGGAAGGAAAAAGTTGGCCCTCTCTAGCTTAG
CTGGTGTTATTATATCCCTCGTCTTACTCTCTTGGGCATTCATCAGTGGA
TCATCTGCTTCTTCAAGTGGAGTCTATGGTTGGATTGCACTCATCGGGTT
AGCCCTATATATTGCTTTCTTTGCACCTGGAATGGGACCTGTGCCATGGA
CTCTGAACTCTGAGGTGTATCCTGAGCAATACCGTGGAATTTGTGGAGGT
ATGTCAGCTACTGTGAACTGCATCTCAAATTTGATCGTGGCCCCCACCTT
CCTGACGGTTGCTGAACTAGTGGGCACTGGAGCCCCTTTCTT
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